View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_535 (Length: 209)
Name: NF11982A_low_535
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_535 |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 64 - 209
Target Start/End: Complemental strand, 10368784 - 10368639
Alignment:
| Q |
64 |
aggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtg |
163 |
Q |
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| T |
10368784 |
aggggtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagtacgggttgtg |
10368685 |
T |
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| Q |
164 |
atgaaggagatgatgaagaagtactgagatgaaggagaagaagaag |
209 |
Q |
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| T |
10368684 |
atgaaggagatgatgaagaagaactgagatgaaggagaagaagaag |
10368639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 10368869 - 10368838
Alignment:
| Q |
19 |
ctccacaattgttccttaagacacacacacgc |
50 |
Q |
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| T |
10368869 |
ctccacaattgttccttaagacacacacacgc |
10368838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 11659653 - 11659512
Alignment:
| Q |
68 |
gtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatga |
167 |
Q |
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| T |
11659653 |
gtgagatcgaaatgcaaacccataccttgaaatagtagcctccttcttgttcttgctgtccttttcaatatttagaccactgcaatgctggttgcaatga |
11659554 |
T |
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| Q |
168 |
aggagatgatgaagaagtactgagatgaaggagaagaagaag |
209 |
Q |
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| T |
11659553 |
aggagatgaagaagaagaactgccatgaagaaggagaagaag |
11659512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 11668822 - 11668681
Alignment:
| Q |
68 |
gtgagatcgaaatgcaaacccatacctagaaatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatga |
167 |
Q |
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| T |
11668822 |
gtgagatcgaaatgcaaaccgataccttgaaatagtagcctccttcttctttttgctgtccttttcaatatttagaccactggagtgctggttgcaatga |
11668723 |
T |
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| Q |
168 |
aggagatgatgaagaagtactgagatgaaggagaagaagaag |
209 |
Q |
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| T |
11668722 |
aggagatgaagaagaagaactgcaatgaagaaggagaagaag |
11668681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 53239290 - 53239215
Alignment:
| Q |
98 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatgaaggaga |
173 |
Q |
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| T |
53239290 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagcgctggttgcaatgaaggaga |
53239215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 2170405 - 2170330
Alignment:
| Q |
98 |
aatagtaacttccttcttcttcttgccgtccttttcaattttcataccactacagcacgggttgtgatgaaggaga |
173 |
Q |
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| T |
2170405 |
aatagtagcttctttcttcttcttgctgtccttttcaattttcagaccactgcagcgctggttgcaatgaaggaga |
2170330 |
T |
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