View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_536 (Length: 209)
Name: NF11982A_low_536
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_536 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 2442889 - 2442698
Alignment:
| Q |
18 |
aatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatctcactgacactgtttaccagaaattgatcgagggctcctctatattaccatt |
117 |
Q |
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| T |
2442889 |
aatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatcacactaacactgtttaccagaaattgatcgagggcttctttatattaccatt |
2442790 |
T |
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| Q |
118 |
ttacaatgcaattctagaaattttgtatcattctatcgcatgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcgg |
209 |
Q |
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| T |
2442789 |
ttacaatcaatttatacaaattttgtatcattctatcgcacgcagagcaagatagtctgaaaatggttgcaaaaagagaagctagagttcgg |
2442698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 50984196 - 50984328
Alignment:
| Q |
42 |
ccttgtttttgtttcaagttcatctcactgacactgt--ttaccagaaattgatcgagggctcctctatattaccattttacaatgcaattctagaaatt |
139 |
Q |
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| T |
50984196 |
ccttgattttgtttcaacttcatctcactgaaactgtgttttctagaaattgattgagggcttctctatattaccatttt-caat-caattctacaaatt |
50984293 |
T |
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| Q |
140 |
ttgtatcattctatcgcatgcagagcaagatagtc |
174 |
Q |
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| T |
50984294 |
ttgttttaatctgtcacatgcagagcaagatagtc |
50984328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 34019916 - 34019952
Alignment:
| Q |
162 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
198 |
Q |
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| T |
34019916 |
gagcaagatagtctgaaaatggttgcaaaaagagaag |
34019952 |
T |
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