View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_55 (Length: 394)
Name: NF11982A_low_55
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 7627372 - 7627742
Alignment:
| Q |
19 |
taaaaccaccatcttcagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttggac |
118 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7627372 |
taaaaccaccatctccagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttgaac |
7627471 |
T |
|
| Q |
119 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627472 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaaggtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
7627571 |
T |
|
| Q |
219 |
agaatcttctccaccatagttgtttttcctttctttctccatgtgcagacatcttgtttgcaattgctagggttcttgcaaaatactcatcagtcacttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627572 |
agaatcttctccaccatagttgtttttcctttctttctccatgtgcagacatcttgtttgcaattgctagggttcttgcaaaatactcatcagtcacttt |
7627671 |
T |
|
| Q |
319 |
gaatgtgacagttaattagaaac-nnnnnnnttatataaaagctatagttataaagaaacggagggagtat |
388 |
Q |
| |
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||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
7627672 |
gaaagtgacagttaattagaaacaaaaaaatttatgtaaaagttatagttataaagaaacggagggagtat |
7627742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 11356846 - 11356770
Alignment:
| Q |
138 |
tcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatgga |
214 |
Q |
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|||| |||||| ||| | ||||| |||||||||||||||||| ||| |||| ||||| ||||||| | |||||||| |
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| T |
11356846 |
tcatcaatggataaaattgtaacatcattggattcttctatgacgcacaccaaatagtcgaatctttatgtcatgga |
11356770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 391
Target Start/End: Original strand, 38009954 - 38010031
Alignment:
| Q |
314 |
actttgaatgtgacagttaattagaaacnnnnnnnttatataaaagctatagttataaagaaacggagggagtattat |
391 |
Q |
| |
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|||||||| ||||||||||||| ||||| |||| |||||| | |||||||||| ||||||||||||||||| |
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| T |
38009954 |
actttgaaagtgacagttaattggaaacaaaaaaattatgtaaaagtgacagttataaaggaacggagggagtattat |
38010031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 8921399 - 8921025
Alignment:
| Q |
19 |
taaaaccaccatcttcagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttggac |
118 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
8921399 |
taaaaccaccatctccagctcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcatgcttcttgaac |
8921300 |
T |
|
| Q |
119 |
aagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8921299 |
aagaaaattgctttgcagttcattaatggaaaaagcggtaacatcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggaccta |
8921200 |
T |
|
| Q |
219 |
agaatcttctccaccatagttgtttttcctttctttctccatgtgcagacatcttgtttgcaattgctagggttcttgcaaaatactcatc-----agtc |
313 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
8921199 |
agaatcttctccaccatagttttttttcctttctttctccatgtgcatacatcttgtttgcaattgctagggttcttgcaaaatactcatccactgattc |
8921100 |
T |
|
| Q |
314 |
actttgaatgtgacagttaattagaaacnnnnnnnttatataaaagctatagttataaagaaacggagggagtat |
388 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| ||||||| | |||||||||| |||||||||||||| |
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| T |
8921099 |
actttgaaagtgacagttaattagaaacaaaaaaattatgtaaaagcgacagttataaaggaacggagggagtat |
8921025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 35372092 - 35372221
Alignment:
| Q |
100 |
tcattcttgcttcttggacaagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaa |
199 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||||||||| ||| |||| ||||||||| ||||| ||||||||||| | || |||||||||||||| |
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| T |
35372092 |
tcattcttgcttcttgcacaagtaatctgcattgcagttcatcaatagaaagagtggtaacatcattagattcttctatagtacacaccacatagttgaa |
35372191 |
T |
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| Q |
200 |
tcttgaagtcatggacctaagaatcttctc |
229 |
Q |
| |
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|||||| |||||||| |||| ||||||||| |
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| T |
35372192 |
tcttgatgtcatggatctaaaaatcttctc |
35372221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 24659053 - 24659113
Alignment:
| Q |
169 |
attcttctatggagcaaaccacatagttgaatcttgaagtcatggacctaagaatcttctc |
229 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||| |||||||| | ||||||||||| |
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|
| T |
24659053 |
attcttctatagagtagaccacatagttgaatcttgatgtcatggatatgagaatcttctc |
24659113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 10784303 - 10784361
Alignment:
| Q |
156 |
gtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatgga |
214 |
Q |
| |
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||||| ||||| |||||||| || |||||||| ||||| ||||||||||| |||||||| |
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|
| T |
10784303 |
gtaacatcatttgattcttcaattgagcaaacaacataattgaatcttgatgtcatgga |
10784361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 24569603 - 24569526
Alignment:
| Q |
314 |
actttgaatgtgacagttaattagaaacnnnnnnnttatataaaagctatagttataaagaaacggagggagtattat |
391 |
Q |
| |
|
|||||||| || ||| |||||||||||| |||| ||||||| | | |||||||||||||||||||||||||| |
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|
| T |
24569603 |
actttgaaagtaacaattaattagaaacaaaaaaattatgtaaaagcgacaattataaagaaacggagggagtattat |
24569526 |
T |
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