View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_61 (Length: 388)
Name: NF11982A_low_61
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 120 - 335
Target Start/End: Original strand, 14788789 - 14789004
Alignment:
| Q |
120 |
aagaatggattctctcatgtgatttgaggattcattaaagtcctcacaattcattgtaaagtcaagagttttagaaaaaatgaattattaaaggtgacat |
219 |
Q |
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| T |
14788789 |
aagaatggattctctcatgtgatatgaggattcattaaaatcctcacaattcattgtaaagtcaagagttttagaaaaaatgaattattaaaggtgacat |
14788888 |
T |
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| Q |
220 |
atgatgaaaatattgagcat---ccattcccaaaatttcatagcaacaaatgctgaataacacgatgatgaagacatgaaattgacacgagttatacacg |
316 |
Q |
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| T |
14788889 |
atgatgaaaatattgagcatccaccattcccaaaatttcgtagcaacaaatgctgaataacac---gatgaagacatgatattgacacgagttatacacg |
14788985 |
T |
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| Q |
317 |
acctttgtatgtctttatc |
335 |
Q |
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| T |
14788986 |
acctttgtatatctttatc |
14789004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 14787741 - 14787815
Alignment:
| Q |
5 |
aaaatatggacaaatggatcaatatatgacaacataattcgcatgagctagagctcaccgaaattcagcctaatt |
79 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||| |
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| T |
14787741 |
aaaaaatggacaaatggatcaatacatgacaacataatttgcatgagctagaggtcaccgaaattcgtcctaatt |
14787815 |
T |
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