View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_63 (Length: 386)
Name: NF11982A_low_63
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_63 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 6538968 - 6538609
Alignment:
| Q |
21 |
cattgaatagtgaaagattagtgaagacttgaaagaagaaagagtagataaaatgttaaatgtgataatgaagtcatgcggctcatgtcatgagtgtagg |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
6538968 |
cattgaatagtgacagattagtgaagacttcaaagaagaaagagtagataaaatgttaaatgtgataatgaagtcatgtggctcatgtcatgagtgtaag |
6538869 |
T |
|
| Q |
121 |
tcataactcataacatatacttcctccgtaataaaaaaggtacatgtacctttttgctaatattgtgtcacgaaatgagttcacttttcttnnnnnnntg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6538868 |
tcataactcataacatatacttcctccgtaataaaaaaagtacatgtacctttttgctaatattgtgtcacgaaatgagttcacttttcttaaaaaaatg |
6538769 |
T |
|
| Q |
221 |
gtcacttacagtttacattgatttcaatagtataatataacattgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaaagtagt |
320 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6538768 |
gtcacttacag-atacattgatttcaatagtataatataacattgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaaagtagt |
6538670 |
T |
|
| Q |
321 |
agcagagtaattgattggtgatagatgcatgaagttttacatagagagaaagttgttttgt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6538669 |
agcagagtaattgattggtgatagatgcatgaagttgtacatagagagaaagttgttttgt |
6538609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University