View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_67 (Length: 382)
Name: NF11982A_low_67
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 12843679 - 12844054
Alignment:
| Q |
1 |
tcgaaatcaagccaattcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctggaatgcctcagatcctgatgatctttccaca |
100 |
Q |
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| T |
12843679 |
tcgaaatcaagccaattcctcacaattacatttatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccaca |
12843778 |
T |
|
| Q |
101 |
tttgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagact |
200 |
Q |
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| T |
12843779 |
tttgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaagttgcagagact |
12843878 |
T |
|
| Q |
201 |
gaccggaatcatatctgcgcgagagaggtggaagataagacagctgccactgatgcataactgtagcgtgtcggcgggaggatcaaggttgccgggagtc |
300 |
Q |
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| T |
12843879 |
aaccggaatcatatcggcgagagagaggtggaagataagacagctgccactgatgcataactgtagcgtgtcggcgggaggatcaaggttgccgggagtc |
12843978 |
T |
|
| Q |
301 |
cattgaacgccaaggccgacaacgagattacggttacggagattacggttgcggcgaaggtattgaaggtggcgga |
376 |
Q |
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| T |
12843979 |
cattgaacgccaaggccgacaatgagattacggttacagagattacggttgcggcgaaggtattgaaggtggcgga |
12844054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 3 - 341
Target Start/End: Complemental strand, 12861800 - 12861462
Alignment:
| Q |
3 |
gaaatcaagccaattcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctggaatgcctcagatcctgatgatctttccacatt |
102 |
Q |
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| T |
12861800 |
gaaaccaagacatttcctcacaatttcatccatcgataaacgtgaaagagcttcaccattgaactcgtaattcctcaaatcctgaggatttttccacatt |
12861701 |
T |
|
| Q |
103 |
tgcaagcgatgatcaaatctctccagccttctacgatcagcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactga |
202 |
Q |
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||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861700 |
tgcaagcgatgatcaaatctctccagcttcctacgatctgcagcgttccagaatccaacgaaggtgttcttaggatgacggagaaaattgcagagactga |
12861601 |
T |
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| Q |
203 |
ccggaatcatatctgcgcgagagaggtggaagataagacagctgccactgatgcataactgtagcgtgtcggcgggaggatcaaggttgccgggagtcca |
302 |
Q |
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| T |
12861600 |
ccggaatcatatctgcgcgagagaggtggaagataagacagctgccaccgatgcataactgtagcgtgtcggcgggaggatcaaggttgcggttagtcca |
12861501 |
T |
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| Q |
303 |
ttgaacgccaaggccgacaacgagattacggttacggag |
341 |
Q |
| |
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||||||||| ||||||||||| ||||||| ||| ||||| |
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| T |
12861500 |
ttgaacgccgaggccgacaacaagattacagttgcggag |
12861462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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