View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_7 (Length: 479)
Name: NF11982A_low_7
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 467
Target Start/End: Complemental strand, 430801 - 430357
Alignment:
| Q |
15 |
gaccaatacggtgaccggttctttcccaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaatt |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
430801 |
gaccaatacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaatt |
430702 |
T |
|
| Q |
115 |
ttttgaaggactgttttgtccataatatccaaaccaaacatttccatgttgatcactctttgttaggattctaaggaaacaatctacttcaccatctttt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
430701 |
ttttgaaggactgttttgtccataatatccaaaccaaacatttccatgtt---cactctttgttaggattctaaggaaacaatctacttcaccatctttt |
430605 |
T |
|
| Q |
215 |
tatttaacaagtttgaaaatcaatttaaaattaaagaatcaattcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
430604 |
tatttaacaagtttgaaaatcaatttaaaattaaagaatcaatgcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaat |
430505 |
T |
|
| Q |
315 |
gcaagtacaagagaataacacgtaccttagcaacaaagaaaagaacnnnnnnnnnnnnnnnnnnnnatggaatttaatcaacgaataattaattatatac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
430504 |
gcaagtacaagagaataacacgtaccttagcaacaaagaaaagaac-----ttttttttttattttatggaattttatcaacgaataattaattatatac |
430410 |
T |
|
| Q |
415 |
atgcaaatgaaatataaaatcaatattaggaaagaaaaagttgtttttaaggg |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
430409 |
atgcaaatgaaatataaaatcaatattaggaaagaaaaagttgtttttaaggg |
430357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University