View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_71 (Length: 378)
Name: NF11982A_low_71
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 41620806 - 41620442
Alignment:
| Q |
8 |
ttggtgttgagttagtgtccttccttgctgacaaagaagtacctcatctaagatctaaggtggctctaattcatcagaaaagattgctgaaatcttgcta |
107 |
Q |
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| T |
41620806 |
ttggtgttgagttagtgtccttccttgctgacaaagaagtacctcatctaagatctctggtggttctaattcatcagaaaagatagctgaaatcttgcta |
41620707 |
T |
|
| Q |
108 |
catcttccctcttgttcattactagtatcatcgttatcatccatcgcatgacttctcttttctcttggtactaatgaagctgaaacctcttcaaccatca |
207 |
Q |
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| T |
41620706 |
cctcttccctcttgttcattactagtatcatcgttatcatccatcgcatgacttctcttttctcttggtactaatgaagctgaaacctcttcaaccatca |
41620607 |
T |
|
| Q |
208 |
ctggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcaggttgtgccacaccatagtagtt |
307 |
Q |
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| T |
41620606 |
ctggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcattgaccactggatcaggttgtgccacaccatagtagtt |
41620507 |
T |
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| Q |
308 |
ttgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcgccaacaaggttaaccg |
372 |
Q |
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| T |
41620506 |
ttgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcgccaacaaggttaaccg |
41620442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 41624152 - 41623807
Alignment:
| Q |
8 |
ttggtgttgagttagtgtccttccttgctgacaaagaagtacctcatctaagatctaaggtggctctaattcatcagaaaagattgctgaaatcttgcta |
107 |
Q |
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| T |
41624152 |
ttggtgttgagtgagagtctttcctgtctgataaagcagtacctcatctaaaatctctggtggctctaattcatcagagaaaatagctgaaaccttgcta |
41624053 |
T |
|
| Q |
108 |
catcttccctcttgttcattactagtatcatcgttatcatccatcgcatgacttctcttttctcttggtactaatgaagctgaaacctcttcaaccatca |
207 |
Q |
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|||||| ||||||||||||| |||| ||| | || ||||||| ||||||||| ||||| ||||||| ||||| |||||| |||| ||| ||| |
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| T |
41624052 |
gctcttccttcttgttcattacaagtaccattatcattatccatcttatgacttcttttttc---tggtactgttgaaggtgaaacttctttcaccgtca |
41623956 |
T |
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| Q |
208 |
ctggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcaggttgtgccacaccatagtagtt |
307 |
Q |
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| T |
41623955 |
ctggctgaatgtcattccaactccaagttccgttgcaaaaatgtttatcacctcgtgtctcaatgacaactggatcagcttctgtcaagtcatcgtagtt |
41623856 |
T |
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| Q |
308 |
ttgctctactaaaggagtttgtagttctaagtaagaagagtcaaattcg |
356 |
Q |
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| T |
41623855 |
tttttctattaaaggagtttgtagttgtatggaagaagagtcgaattcg |
41623807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 41627113 - 41626791
Alignment:
| Q |
8 |
ttggtgttgagttagtgtccttccttgctgacaaagaagtacctcatctaagatctaaggtggctctaattcatcagaaaagattgctgaaatcttgcta |
107 |
Q |
| |
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||||| |||||| || ||| |||||| |||| |||| |||||||||||||| |||| |||||||||||||||||||| | || ||||||| ||||||| |
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| T |
41627113 |
ttggtattgagtgagagtctttcctttctgataaagcagtacctcatctaaaatctctggtggctctaattcatcagagagaatagctgaaaccttgcta |
41627014 |
T |
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| Q |
108 |
catcttccctcttgttcattactagtatcatcgttatcatccatcgcatgacttctcttttctcttggtactaatgaagctgaaacctcttcaaccatca |
207 |
Q |
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| |||||||||||||||||||| |||||||| | ||||||| | ||||||| ||||| ||||||| ||||| | |||| ||||| | | ||| |
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| T |
41627013 |
cctcttccctcttgttcattacaagtatcattatctctatccatcttacgacttcttttttc---tggtactgttgaaggtaaaacttcttccaacgtca |
41626917 |
T |
|
| Q |
208 |
ctggctgaatttcattccaactccaagttccattctgaaaatggttagcagcttgttgctcaatgaccactggatcaggttgtgccacaccatagtagtt |
307 |
Q |
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| T |
41626916 |
ctggttgaatgtcattccaactccaagttccgttgtgaaaatggttagcaccttgtgtctcgatgacaactggatcagcttctgtcaagtcatagtagtt |
41626817 |
T |
|
| Q |
308 |
ttgctctactaaaggagtttgtagtt |
333 |
Q |
| |
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|| |||| ||||||| ||| ||||| |
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| T |
41626816 |
tttttctattaaaggactttttagtt |
41626791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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