View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_76 (Length: 374)
Name: NF11982A_low_76
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 4 - 369
Target Start/End: Complemental strand, 29056521 - 29056156
Alignment:
| Q |
4 |
attattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaa |
103 |
Q |
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| T |
29056521 |
attattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaa |
29056422 |
T |
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| Q |
104 |
aattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgtaaaa |
203 |
Q |
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| T |
29056421 |
aattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgtaaaa |
29056322 |
T |
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| Q |
204 |
acaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagtatgttgagtggagtaagatc |
303 |
Q |
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| T |
29056321 |
acaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagcatgttgagtggagtaagatc |
29056222 |
T |
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| Q |
304 |
caaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctgagggtaatctt |
369 |
Q |
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| T |
29056221 |
caaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctgagggtaatctt |
29056156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 32848736 - 32848826
Alignment:
| Q |
268 |
agtggagaagcacagtatgttgagtggagtaagatccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctg |
358 |
Q |
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| T |
32848736 |
agtggtgaagcgcagcatgtagaatggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggcgccaactcctg |
32848826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 2811253 - 2811322
Alignment:
| Q |
36 |
catttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaaaa |
105 |
Q |
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| T |
2811253 |
catttgaaacagtttttagattattttcagattctcaattttttaagaatttgtaacaaacagatgaaaa |
2811322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 21479534 - 21479629
Alignment:
| Q |
26 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatg-aaaattttgaaaagtgatt |
120 |
Q |
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| T |
21479534 |
aacagcttctcatttgaagctgtttttagattttttttagattctgatttttttaaaaagctgtaacaaatggatgcaaaattcttaaaagtgatt |
21479629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 42429723 - 42429792
Alignment:
| Q |
26 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaa |
95 |
Q |
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| T |
42429723 |
aacagcttctcatttgaaactgtttttagattatttttagattctgatttttttaaaaagctgtaacaaa |
42429792 |
T |
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