View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_78 (Length: 373)

Name: NF11982A_low_78
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_78
NF11982A_low_78
[»] chr6 (22 HSPs)
chr6 (6-368)||(28097221-28097583)
chr6 (108-356)||(29827130-29827378)
chr6 (15-266)||(28326529-28326780)
chr6 (15-266)||(28504165-28504416)
chr6 (31-300)||(28140602-28140871)
chr6 (32-269)||(28186462-28186699)
chr6 (156-347)||(26950935-26951126)
chr6 (6-269)||(28296617-28296880)
chr6 (6-269)||(28515193-28515456)
chr6 (156-266)||(26636838-26636948)
chr6 (156-266)||(26742804-26742914)
chr6 (6-140)||(28235607-28235741)
chr6 (133-250)||(25075036-25075153)
chr6 (153-353)||(29842785-29842985)
chr6 (175-266)||(26849923-26850014)
chr6 (156-266)||(26960317-26960427)
chr6 (6-140)||(28227994-28228128)
chr6 (223-353)||(27697379-27697509)
chr6 (155-252)||(26812719-26812816)
chr6 (176-249)||(29476962-29477035)
chr6 (156-252)||(27664108-27664204)
chr6 (185-269)||(28244016-28244100)
[»] chr2 (2 HSPs)
chr2 (6-353)||(3280701-3281048)
chr2 (107-252)||(17992109-17992254)
[»] scaffold0019 (1 HSPs)
scaffold0019 (6-368)||(57072-57434)
[»] chr5 (1 HSPs)
chr5 (195-368)||(16692098-16692271)
[»] chr4 (1 HSPs)
chr4 (6-324)||(5089772-5090090)
[»] chr1 (1 HSPs)
chr1 (109-252)||(26137033-26137176)
[»] scaffold0038 (3 HSPs)
scaffold0038 (6-140)||(35769-35903)
scaffold0038 (6-140)||(28492-28626)
scaffold0038 (185-269)||(44178-44262)
[»] chr8 (1 HSPs)
chr8 (195-368)||(31906285-31906458)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 6 - 368
Target Start/End: Complemental strand, 28097583 - 28097221
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097583 gtttggtgctggcagtagagtgattgttaccactcgagataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 28097484  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097483 aaagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 28097384  T
Q  206 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097383 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 28097284  T
Q  306 agagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097283 agagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 28097221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 108 - 356
Target Start/End: Original strand, 29827130 - 29827378
Alignment:
Q  108 agaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggc 207  Q
    |||| ||||||||||  |||||||||| |||||||||| ||    || ||||||||| |||||    |||||| |||||||||||  ||||||| |||||    
T  29827130 agaatcccttgaattatttaggtggaaagcttttaaagatagtataggtgattcaagatatgatgacattttagaccgtgcaatagcttatgcttctggc 29827229  T
Q  208 cttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaag 307  Q
    ||||| ||||  || ||| || ||||| ||   |||| ||||||| |||||||||||||||| ||| | || ||| |||||||||| ||||||| | |||    
T  29827230 cttccgttggttttagaattagtaggtcccgcgttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaag 29827329  T
Q  308 agattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatga 356  Q
    |||| ||||| ||||||    | ||||||||||||||||||||||||||    
T  29827330 agatccaaaatatacttaaaataagttttgatgctttggaggaagatga 29827378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 28326529 - 28326780
Alignment:
Q  15 tggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcc 114  Q
    ||||||||||||||| ||||||||||| || ||| | ||||||  |||||| |||||||||  | |||||||||  |   ||||||  |||| ||||||     
T  28326529 tggcagtagagtgatcgttaccactcgagacaaacatttgctaaaaagtcacgggattgaaagagcatatgaaattcctaagttaattaagagagaagct 28326628  T
Q  115 cttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccat 214  Q
    ||||||||| | ||||||||  |||| |||  |||  |||| ||||||| || |||  | |||||| || ||||| ||| ||||||| ||||||||||||    
T  28326629 cttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggccttccat 28326728  T
Q  215 tggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 266  Q
    |||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28326729 tggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28326780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 28504165 - 28504416
Alignment:
Q  15 tggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcc 114  Q
    ||||||||||||||| ||||||||||| || ||| | ||||||  |||||| |||||||||  | |||||||||  |   ||||||  |||| ||||||     
T  28504165 tggcagtagagtgatcgttaccactcgagacaaacatttgctaaaaagtcacgggattgaaagagcatatgaaattcctaagttaattaagagagaagct 28504264  T
Q  115 cttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccat 214  Q
    ||||||||| | ||||||||  |||| |||  |||  |||| ||||||| || |||  | |||||| || ||||| ||| ||||||| ||||||||||||    
T  28504265 cttgaattgttgaggtggaatactttcaaaaataacaaagtcgattcaaattttgacggcattttatactgtgcagtaacttatgcttctggccttccat 28504364  T
Q  215 tggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 266  Q
    |||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28504365 tggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28504416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 300
Target Start/End: Original strand, 28140602 - 28140871
Alignment:
Q  31 gttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcccttgaattgcttaggt 130  Q
    ||||| ||||| || ||| | ||||||||| |||||||||||||   ||| ||||||  | | | |||||| ||| ||||||| || || ||||| |  |    
T  28140602 gttacaactcgagacaaacatttgctagcatgtcatgggattgagagaacttatgaactagatgggttaaataaggaagaagctctagagttgctgaaat 28140701  T
Q  131 ggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatatt 230  Q
    ||||||| ||||||  |||  ||||||||||||||||||||   ||||||||||||||| | | ||||||  |||||||||||||||| || ||| || |    
T  28140702 ggaaggcatttaaaaataataaagttgattcaagttatgagcacattttaaaccgtgcagttacttatgcctctggccttccattggctttagaagtagt 28140801  T
Q  231 aggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcct 300  Q
     ||||| | ||||| ||||||||||| ||| || ||||| |||   || ||||| |||||||| ||||||    
T  28140802 tggttctagcttgtttggaaagcataaagatgagtggaaatctacattagatcggtatgaaaggattcct 28140871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 269
Target Start/End: Original strand, 28186462 - 28186699
Alignment:
Q  32 ttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaagaaagaagcccttgaattgcttaggtg 131  Q
    |||||||||| || ||| | ||||||||   |||||||||||||  | ||||| ||  |||  |||||||  |||||||||| ||||||||| | | |||    
T  28186462 ttaccactcgagacaaacaattgctagctcatcatgggattgaaagagcatataaattacataagttaaatgagaaagaagctcttgaattgttgacgtg 28186561  T
Q  132 gaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatatta 231  Q
    ||||||||| |||  |||  |||||||| ||| ||  ||  |  ||||| ||| |||| ||| ||||||| |||||||||||||||| || ||| || |     
T  28186562 gaaggctttaaaaaataacaaagttgatacaaatttcgacagcgttttacaccatgcagtaacttatgcttctggccttccattggctttagaagtagtg 28186661  T
Q  232 ggttccaacttgtatggaaagcatatagaagaatggaa 269  Q
    ||||||||||||| ||||||| |||||| |||||||||    
T  28186662 ggttccaacttgtttggaaagaatataggagaatggaa 28186699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 347
Target Start/End: Original strand, 26950935 - 26951126
Alignment:
Q  156 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcat 255  Q
    ||||||||| |||||  ||||||||||||||||| | || |||||||||||||||||||| || || ||| || | ||||| ||||||| |||||||  |    
T  26950935 tgattcaaggtatgatagtattttaaaccgtgcagttaaatatgctgctggccttccattagctttagaagtagtgggttctaacttgtttggaaagact 26951034  T
Q  256 atagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttgga 347  Q
    |||| ||||||  | ||||| || |||   ||||||||||||||   |||||| || ||||| ||||||   || || ||||||||||||||    
T  26951035 atagcagaatgtgagtctttattagataagtatgaaagaattccacatgaagatatccaaaagatacttaaagtaagctttgatgctttgga 26951126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 28296880 - 28296617
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    ||||||| |||| |||| ||||||  |||||||||  || ||||| |||||||   ||||||||||||||  | ||||||||| |||  |||||||  |     
T  28296880 gtttggtcttggaagtaaagtgatcattaccactcaagaaaaaaaattgctagatggtcatgggattgaaagagcatatgaaatacataagttaaatgac 28296781  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 205  Q
    |||||||| ||||||||| | || ||||| ||||| |||  |||  |||| ||| ||| || |||    |||||| |||  ||  ||| ||||||| |||    
T  28296780 aaagaagctcttgaattgttgagatggaatgctttcaaaaataacaaagtcgatacaaattttgacgacattttacaccaggctgtaacttatgcttctg 28296681  T
Q  206 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 269  Q
    ||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28296680 gccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 28515193 - 28515456
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    ||||||| |||| |||| ||||||  |||||||||  || ||||| |||||||   ||||||||||||||  | ||||||||| |||  |||||||  |     
T  28515193 gtttggtcttggaagtaaagtgatcattaccactcaagaaaaaaaattgctagatggtcatgggattgaaagagcatatgaaatacataagttaaatgac 28515292  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 205  Q
    |||||||| ||||||||| | || ||||| ||||| |||  |||  |||| ||| ||| || |||    |||||| |||  ||  ||| ||||||| |||    
T  28515293 aaagaagctcttgaattgttgagatggaatgctttcaaaaataacaaagtcgatacaaattttgacgacattttacaccaggctgtaacttatgcttctg 28515392  T
Q  206 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 269  Q
    ||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28515393 gccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28515456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 26636838 - 26636948
Alignment:
Q  156 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcat 255  Q
    ||||||||| ||||| |  ||||||||||||||| | || |||||| ||||||||||||| || || ||| || | ||||||||||||| |||||||  |    
T  26636838 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagt 26636937  T
Q  256 atagaagaatg 266  Q
    |||| ||||||    
T  26636938 atagcagaatg 26636948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 26742804 - 26742914
Alignment:
Q  156 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcat 255  Q
    ||||||||| ||||| |  ||||||||||||||| | || |||||| ||||||||||||| || || ||| || | ||||||||||||| |||||||  |    
T  26742804 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagt 26742903  T
Q  256 atagaagaatg 266  Q
    |||| ||||||    
T  26742904 atagcagaatg 26742914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 28235607 - 28235741
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    |||||||  ||| |||| ||||||  |||||||||| || ||| | ||||||||||||||||||||||||  ||| || |||| | |  |||||||  ||    
T  28235607 gtttggtcctggaagtaaagtgatcattaccactcgagacaaacaattgctagcaagtcatgggattgaaagaacgtacgaaatagataagttaaatgag 28235706  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttt 140  Q
    || ||||| ||||||||| | ||||||||||||||    
T  28235707 aacgaagctcttgaattgttgaggtggaaggcttt 28235741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 25075036 - 25075153
Alignment:
Q  133 aaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattag 232  Q
    ||||||||||||  |||| ||  ||||||||| ||||| |  ||||||||||||||||| || |||||| ||||||||||||| || || ||| |  | |    
T  25075036 aaggcttttaaaagtaaaaaaaatgattcaagctatgattacattttaaaccgtgcaattaaatatgcttctggccttccattagctttagaagttgtgg 25075135  T
Q  233 gttccaacttgtatggaa 250  Q
    |||||||||||| |||||    
T  25075136 gttccaacttgtttggaa 25075153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 353
Target Start/End: Complemental strand, 29842985 - 29842785
Alignment:
Q  153 agttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaac-ttgtatggaaa 251  Q
    |||||||||||| |||||    |||||| |||||||||||  ||||||| |||||||||| ||||  || ||| || |||| |||| | |||| ||||||    
T  29842985 agttgattcaagctatgatgacattttagaccgtgcaatagcttatgcttctggccttccgttggttttagaattagtagg-tccagctttgtttggaaa 29842887  T
Q  252 gcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaa 351  Q
    | |||||||||||||||| |||   || ||| | |||||||| ||||||| | ||||||| || || ||||||    | || ||||||||||||||||||    
T  29842886 gaatatagaagaatggaaatctacattagataggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgatgctttggaggaa 29842787  T
Q  352 ga 353  Q
    ||    
T  29842786 ga 29842785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 266
Target Start/End: Original strand, 26849923 - 26850014
Alignment:
Q  175 attttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 266  Q
    |||||||| |||||| | || |||||| ||||||||||||| || || ||| || | ||||||||||||| |||||||  ||||||||||||    
T  26849923 attttaaatcgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggaaagagtatagaagaatg 26850014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 26960317 - 26960427
Alignment:
Q  156 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcat 255  Q
    ||||||||| ||||| |  ||||||||||||||| | || |||||| ||||||||||||| || || ||| || | ||||||||||||| ||| |||  |    
T  26960317 tgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaacttgtttggcaagagt 26960416  T
Q  256 atagaagaatg 266  Q
    |||| ||||||    
T  26960417 atagcagaatg 26960427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 28227994 - 28228128
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    |||||||  ||| |||| ||||||  ||||||||||  | ||| | ||||||||||||||||||||||||  | ||||||||| | |  |||||||  ||    
T  28227994 gtttggtcctggaagtaaagtgatcattaccactcgaaacaaacaattgctagcaagtcatgggattgaaagagcatatgaaatagataagttaaatgag 28228093  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttt 140  Q
    || ||||| ||||||||| | |||||||| |||||    
T  28228094 aacgaagctcttgaattgatgaggtggaacgcttt 28228128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 353
Target Start/End: Complemental strand, 27697509 - 27697379
Alignment:
Q  223 gaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtgaagagattcaaaaaatac 322  Q
    |||||| | ||||| ||||||| ||||||| | |||||||||||||| | | | || ||| | ||||| || ||||| | | ||||||| ||||| ||||    
T  27697509 gaaatagtgggttctaacttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacaggattcccaataaagagatccaaaagatac 27697410  T
Q  323 ttcgtgtgagttttgatgctttggaggaaga 353  Q
    || | ||||| | |||||||||||| |||||    
T  27697409 ttagagtgagctatgatgctttggaagaaga 27697379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 26812719 - 26812816
Alignment:
Q  155 ttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaag 252  Q
    |||||||||||||||| |  |||||||| || ||| |||| ||| || ||||||||||||| ||  | ||| || | ||||||||||||| |||||||    
T  26812719 ttgattcaagttatgattacattttaaatcgcgcagtaaaatatacttctggccttccattagctatagaagtagtgggttccaacttgtttggaaag 26812816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 29477035 - 29476962
Alignment:
Q  176 ttttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatgga 249  Q
    |||||||||| ||| ||| ||||||| | || |||||||||||||||||| || ||||||| | ||||| ||||    
T  29477035 ttttaaaccgagcagtaacttatgcttccgggcttccattggccttggaagtaataggttcaagcttgtttgga 29476962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 27664204 - 27664108
Alignment:
Q  156 tgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaag 252  Q
    |||||| || ||||| | |||||||||||||||| |  | |||||| ||||||||||||| || ||  || || | ||||||||||||| |||||||    
T  27664204 tgattccagctatgattatattttaaaccgtgcagttgaatatgcttctggccttccattagctttaaaagtagtgggttccaacttgtttggaaag 27664108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 28244016 - 28244100
Alignment:
Q  185 gtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 269  Q
    ||||| ||| ||||||| |||||||||||||||| || ||| || | ||||| ||||| | ||||||  |||||| |||||||||    
T  28244016 gtgcagtaacttatgcttctggccttccattggctttagaagtagtgggttcaaacttatttggaaataatataggagaatggaa 28244100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 6 - 353
Target Start/End: Original strand, 3280701 - 3281048
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    |||| ||||||| ||||| |||||  |||||||||| || ||| ||||| || ||||||||||||||||| |||||||||||| | | |||||||| |||    
T  3280701 gtttagtgttggtagtagggtgatcattaccactcgagacaaacacttgttatcaagtcatgggattgaactaacatatgaaatagatgagttaaataag 3280800  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 205  Q
     ||||||| |||||||||||||  |||||||||||||||  ||| |||||| ||||||||||||||    || ||||||| ||| ||||||||||| |||    
T  3280801 gaagaagcacttgaattgcttacatggaaggcttttaaaagtaagcaagttaattcaagttatgagcacgttctaaaccgcgcagtaaattatgcttctg 3280900  T
Q  206 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 305  Q
    ||||||||||||| || ||| |||||||||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||| | |    
T  3280901 gccttccattggcattagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgatatgaaaggattcctaataa 3281000  T
Q  306 agagattcaaaaaatacttcgtgtgagttttgatgctttggaggaaga 353  Q
    ||||||||| || ||||||   ||||||||||||||||||||||||||    
T  3281001 agagattcagaagatacttaaagtgagttttgatgctttggaggaaga 3281048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 252
Target Start/End: Complemental strand, 17992254 - 17992109
Alignment:
Q  107 aagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctgg 206  Q
    ||||||| |||||| || | ||||||||||| |||||||  ||  || ||||||| |||||| | | |||||||||||||| | | || |||||||||||    
T  17992254 aagaagctcttgaactgttaaggtggaaggcatttaaaggcaacgaaattgattctagttataactatattttaaaccgtgtagttaaatatgctgctgg 17992155  T
Q  207 ccttccattggccttggaaatattaggttccaacttgtatggaaag 252  Q
    ||| ||||| || || ||| || | ||||||||||||| |||||||    
T  17992154 cctcccattagctttagaagtagtgggttccaacttgtttggaaag 17992109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 368
Target Start/End: Complemental strand, 57434 - 57072
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    |||||||  ||| |||| ||||||  |||||||||| ||  || | ||||||||| ||||||||||||||  | ||||||||| | |  |||||||  ||    
T  57434 gtttggtcctggtagtaaagtgatcattaccactcgagacgaacaattgctagcaggtcatgggattgaaagagcatatgaaatagataagttaaatgag 57335  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 205  Q
    |||||||| ||||||||| | |||||||| ||||| |||  |||  ||||  || ||| ||  ||     ||||| ||| |||| ||| ||||||| | |    
T  57334 aaagaagctcttgaattgttgaggtggaatgctttcaaaaataacaaagtcaatccaaatttcgacaacgttttacaccttgcagtaacttatgcttcag 57235  T
Q  206 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 305  Q
    |||||||||||||||| ||| || | ||||| ||||||| ||||||| |||||| ||||||||| |||   ||  |||  |||||||| ||||| | | |    
T  57234 gccttccattggccttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccattaa 57135  T
Q  306 agagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 368  Q
    | |||| ||| | ||||||   || || ||||||||||||||||||||||||| || ||||||    
T  57134 aaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttt 57072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 195 - 368
Target Start/End: Original strand, 16692098 - 16692271
Alignment:
Q  195 ttatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaaga 294  Q
    ||||||| ||||||||||||| || || ||| || |||| || ||||||| ||||||| |||||||||||||||| |||   || |||||||||||| |     
T  16692098 ttatgcttctggccttccattagctttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatgaatgg 16692197  T
Q  295 attcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 368  Q
    |||||| || ||   ||||| |||||||||   || |||||||||  ||||||||||||||| | |||||||||    
T  16692198 attcctggtaaacgaattcacaaaatacttaaagtaagttttgatagtttggaggaagatgaaaagagtgtttt 16692271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 324
Target Start/End: Complemental strand, 5090090 - 5089772
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    ||||||| ||||||| ||||| ||  |||||||||| || ||| ||||||||  | |||||||||||||  ||||||| |||  | | |  |||||  ||    
T  5090090 gtttggtcttggcagcagagtcatcattaccactcgagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgag 5089991  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctg 205  Q
    || ||||| ||| ||||  | ||||||||||||||||||  ||     ||| || ||||||||||  | |||||||||||||   ||| ||||||| |||    
T  5089990 aacgaagctcttcaattattaaggtggaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctg 5089891  T
Q  206 gccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcctagtga 305  Q
    ||||||||||||| || ||| |  | |||||||| |||| ||||||| |||||||| ||||||| |||||  | |||   |||||||| ||||||| | |    
T  5089890 gccttccattggctttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatctttactagatgagtatgaaaggattcctaataa 5089791  T
Q  306 agagattcaaaaaatactt 324  Q
    ||| || ||||| ||||||    
T  5089790 agaaatccaaaagatactt 5089772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 252
Target Start/End: Original strand, 26137033 - 26137176
Alignment:
Q  109 gaagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggcc 208  Q
    ||||| ||||||||| ||||||||| ||||||||||  ||| ||   ||| ||||||||||| | |||||||||| ||||| | || |||||| ||||||    
T  26137033 gaagctcttgaattgtttaggtggatggcttttaaaagtaaccacaatgactcaagttatgattatattttaaacagtgcagttaaatatgcttctggcc 26137132  T
Q  209 ttccattggccttggaaatattaggttccaacttgtatggaaag 252  Q
    |||| || || || ||| || | ||||||| ||||| |||||||    
T  26137133 ttccgttagctttagaagtagtgggttccagcttgtttggaaag 26137176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 35769 - 35903
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    |||||||  ||| |||| ||||||  |||||||||| || ||| | ||||||||||||||||||||||||  ||| || |||| | |  |||||||  ||    
T  35769 gtttggtcctggaagtaaagtgatcattaccactcgagacaaacaattgctagcaagtcatgggattgaaagaacgtacgaaatagataagttaaatgag 35868  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttt 140  Q
    || ||||| ||||||||| | ||||||||||||||    
T  35869 aacgaagctcttgaattgttgaggtggaaggcttt 35903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 140
Target Start/End: Original strand, 28492 - 28626
Alignment:
Q  6 gtttggtgttggcagtagagtgattgttaccactcgggataaaaacttgctagcaagtcatgggattgaagtaacatatgaaacacacgagttaaacaag 105  Q
    |||||||  ||| |||| ||||||  ||||||||||  | ||| | ||||||||||||||||||||||||  | ||||||||| | |  |||||||  ||    
T  28492 gtttggtcctggaagtaaagtgatcattaccactcgaaacaaacaattgctagcaagtcatgggattgaaagagcatatgaaatagataagttaaatgag 28591  T
Q  106 aaagaagcccttgaattgcttaggtggaaggcttt 140  Q
    || ||||| ||||||||| | |||||||| |||||    
T  28592 aacgaagctcttgaattgatgaggtggaacgcttt 28626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 44178 - 44262
Alignment:
Q  185 gtgcaataaattatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 269  Q
    ||||| ||| ||||||| |||||||||||||||| || ||| || | ||||| ||||| | ||||||  |||||| |||||||||    
T  44178 gtgcagtaacttatgcttctggccttccattggctttagaagtagtgggttcaaacttatttggaaataatataggagaatggaa 44262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 368
Target Start/End: Original strand, 31906285 - 31906458
Alignment:
Q  195 ttatgctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaaga 294  Q
    ||||||| |||| ||||||||||| |||  | |  | |||||||| || | ||||||| ||||| |||||||| | |||   ||  ||||||||||||      
T  31906285 ttatgcttctggacttccattggctttgatagttattggttccaatttatttggaaagaatatacaagaatgggaatctgcattacatcgatatgaaatc 31906384  T
Q  295 attcctagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 368  Q
    ||||| | | ||||||| ||||| |||||    || ||||||||||||||||||||||||||||  ||||||||    
T  31906385 attccaaataaagagatccaaaatatactcaaagtaagttttgatgctttggaggaagatgagaaaagtgtttt 31906458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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