View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_81 (Length: 364)
Name: NF11982A_low_81
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_81 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 6236238 - 6236580
Alignment:
| Q |
18 |
aagaaataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcaccggtcaagg |
117 |
Q |
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| T |
6236238 |
aagaaataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcactggtcaagg |
6236337 |
T |
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| Q |
118 |
caataatatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaataga |
217 |
Q |
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| T |
6236338 |
caata-tatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaataga |
6236436 |
T |
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| Q |
218 |
aattgaaaacctaggtgataggtaaaaatctaannnnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaacccataacaag |
317 |
Q |
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| T |
6236437 |
aattgaaaacctaggtgataggtgaaaatctaattttttttttttt---atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaa |
6236533 |
T |
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| Q |
318 |
gtctacatcaggaagaaacaaaaacagaaaaggcagaattacatcaa |
364 |
Q |
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| T |
6236534 |
gtctacatcaggaagaaacaaaaatagaaaaggcagaattacatcaa |
6236580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 6240403 - 6240435
Alignment:
| Q |
20 |
gaaataacacaaaaggtaaacacatccatatct |
52 |
Q |
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| T |
6240403 |
gaaataacacaaaaggtaaacacatccatatct |
6240435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
145 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtaaaa |
244 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||| ||| |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
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| Q |
245 |
atctaa |
250 |
Q |
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|||||| |
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| T |
33891812 |
atctaa |
33891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
145 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtaaaa |
244 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||| ||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
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| Q |
245 |
atctaa |
250 |
Q |
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|||||| |
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| T |
33952436 |
atctaa |
33952441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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