View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982A_low_89 (Length: 358)
Name: NF11982A_low_89
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_89 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 26817439 - 26817095
Alignment:
| Q |
7 |
gggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaattattttaatccttgttgaattcactagttgattataatttaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26817439 |
gggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaattattttaatccttgttgaattcactagtcgattataatttaact |
26817340 |
T |
|
| Q |
107 |
tatgatctaaattcatgcatgtccttgtttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttgcaattttttctttgttcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26817339 |
tatgatctaaattcatgcatgtccttgtttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttgcaattttttctttgttcaa |
26817240 |
T |
|
| Q |
207 |
aagattgtggtgcacatacacacatttgtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26817239 |
aagattgtggtgcacatacacacatttgtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgttt |
26817140 |
T |
|
| Q |
307 |
atgtcccttccatcatcacccttctaaaagctgttggaacaccaa |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26817139 |
atgtcccttccatcatcacccttctaaaagctgttggaacaccaa |
26817095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 93 - 351
Target Start/End: Complemental strand, 26790643 - 26790385
Alignment:
| Q |
93 |
attataatttaacttatgatctaaattcatgcatgtccttgtttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttgcaatt |
192 |
Q |
| |
|
|||||||| ||| |||| || | ||||||| |||| |||||||||| | | |||||||||||||||||||| ||||||| || ||||||||| || || |
|
|
| T |
26790643 |
attataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagtt |
26790544 |
T |
|
| Q |
193 |
ttttctttgttcaaaagattgtggtgcacatacacacatttgtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaa |
292 |
Q |
| |
|
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
26790543 |
ttttctttattcgaaagattgtggtgcacgtacacacatttgtgttctattgcatattgttacctgcaactgttatggttcctgaggttgtggtccctaa |
26790444 |
T |
|
| Q |
293 |
atggggaactgtttatgtcccttccatcatcacccttctaaaagctgttggaacaccaa |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26790443 |
atggggaactgtttatgtcccttccatcatcacccttcttaaagctgttggaacaccaa |
26790385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 134 - 351
Target Start/End: Complemental strand, 26784234 - 26784017
Alignment:
| Q |
134 |
tttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttgcaattttttctttgttcaaaagattgtggtgcacatacacacattt |
233 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| |||||| |||| || |||||||||||| | ||||||||||| |||||| |||||||| |
|
|
| T |
26784234 |
tttaatttgtctatggcagaaagtgtctttgtggaagaaaacatatatggtttacagttttttctttgtccggaagattgtggttcacataaacacattt |
26784135 |
T |
|
| Q |
234 |
gtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatgtcccttccatcatcacccttctaa |
333 |
Q |
| |
|
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
26784134 |
gtgttatattgcattgtgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatatccctaccatcatcaccctcctaa |
26784035 |
T |
|
| Q |
334 |
aagctgttggaacaccaa |
351 |
Q |
| |
|
| || |||| | |||||| |
|
|
| T |
26784034 |
acgcggttgcagcaccaa |
26784017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 146 - 351
Target Start/End: Complemental strand, 26830943 - 26830738
Alignment:
| Q |
146 |
attgcagaaagtgtctttgtggaagaagttatatattgtttgcaattttttctttgttcaaaagattgtggtgcacatacacacatttgtgttctattgc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||| |||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
26830943 |
attgcagaaagtgtctttgtggaagaagatatatgttgtttacagttttttctttgttcggaagattgtggcccacatcaacacatttgttttctattgc |
26830844 |
T |
|
| Q |
246 |
gttctgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatgtcccttccatcatcacccttctaaaagctgttggaa |
345 |
Q |
| |
|
|| |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
26830843 |
attgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttggaa |
26830744 |
T |
|
| Q |
346 |
caccaa |
351 |
Q |
| |
|
| |||| |
|
|
| T |
26830743 |
ctccaa |
26830738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University