View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_9 (Length: 476)
Name: NF11982A_low_9
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 38624030 - 38624483
Alignment:
| Q |
17 |
cctgtgtccttcaatctaaattgtttcataaaagatgttgaagcatttagcatcgccctaatcattgaagcatctacaaagacattaatcataaaattca |
116 |
Q |
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| T |
38624030 |
cctgtgtccttcaatctaaattgtttcataaaagatgttgaagcatttagcatcgccctaatcgttgaagcacctacaaagacattaatcataaa-ttca |
38624128 |
T |
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| Q |
117 |
tggatctcaaggaccaacaagacaacacattgttaagcagcaactacatgcccaccaatactctataaccatatcccaagcagagttgtgctagcaacat |
216 |
Q |
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| T |
38624129 |
tggatctcaaggaccaacaagacaacacattgttaagcagcaactacatgcccaccaatactctataaccatatcccaagcagagttgtgccagcaacat |
38624228 |
T |
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| Q |
217 |
tcaatctaacactttctttttaacatttactttttatgaagttgaaatatttgcaagactttatgtttctccattttcaaaatggtttaacctacatatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38624229 |
tcaatctaacactttctttttaacatttactttttatgaagttgaaatatttgcaagactttatgtttttccattttcaaaatggtttaacctacatatt |
38624328 |
T |
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| Q |
317 |
ttccacttaatgagtgagtgctaagaaagaaattattagaatgagtgttgccagcactcgattattttgaagcgcggatatgttttgacgggtatgctta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38624329 |
ttccacttaatgagtgagtgctaagaaagaaattattagaatgagtgttgccagcactcgattattttgaagcgcggatatgttttgacgggtatgctta |
38624428 |
T |
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| Q |
417 |
ttataatttatagacaacctccatgagagtgttcttacaaactcagactaatagt |
471 |
Q |
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| T |
38624429 |
ttataatttatagacaacctccatgagagtgttcttacaaactcagactaatagt |
38624483 |
T |
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