View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982A_low_92 (Length: 356)
Name: NF11982A_low_92
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982A_low_92 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 45282306 - 45282648
Alignment:
| Q |
9 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctac |
108 |
Q |
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| T |
45282306 |
agacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttg |
45282405 |
T |
|
| Q |
109 |
gtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
208 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282406 |
gtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
45282505 |
T |
|
| Q |
209 |
gataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
308 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282506 |
gataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
45282605 |
T |
|
| Q |
309 |
tgaattttgagagtgatgccactttttctcatatactgtttct |
351 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45282606 |
tgaattttgagagtgatgccactttttctcatatactctttct |
45282648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 45274063 - 45274405
Alignment:
| Q |
9 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctac |
108 |
Q |
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| T |
45274063 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctac |
45274162 |
T |
|
| Q |
109 |
gtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
208 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
45274163 |
gtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatg |
45274262 |
T |
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| Q |
209 |
gataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
308 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| | | ||||||||||| |||||||||||||||||||| |
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| T |
45274263 |
gataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaa |
45274362 |
T |
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| Q |
309 |
tgaattttgagagtgatgccactttttctcatatactgtttct |
351 |
Q |
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| T |
45274363 |
taaattttgagagtgatgctactttttcttatatactctttct |
45274405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 45293653 - 45293904
Alignment:
| Q |
16 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttcta |
115 |
Q |
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||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45293653 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45293752 |
T |
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| Q |
116 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
215 |
Q |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
45293753 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45293852 |
T |
|
| Q |
216 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
264 |
Q |
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||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45293853 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 45302613 - 45302864
Alignment:
| Q |
16 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttcta |
115 |
Q |
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||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45302613 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45302712 |
T |
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| Q |
116 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
215 |
Q |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
45302713 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45302812 |
T |
|
| Q |
216 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
264 |
Q |
| |
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||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45302813 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 45270547 - 45270870
Alignment:
| Q |
20 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatg |
119 |
Q |
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||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
|
| Q |
120 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
219 |
Q |
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|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
|
| Q |
220 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
318 |
Q |
| |
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||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
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| Q |
319 |
gagtgatgccactttttctcatatact |
345 |
Q |
| |
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||||||||| ||| |||| ||| |||| |
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| T |
45270844 |
gagtgatgctactatttcacatctact |
45270870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 45293957 - 45294022
Alignment:
| Q |
275 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
340 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45294022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 45302917 - 45302982
Alignment:
| Q |
275 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
340 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45302982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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