View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982A_low_94 (Length: 356)

Name: NF11982A_low_94
Description: NF11982A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982A_low_94
NF11982A_low_94
[»] chr6 (26 HSPs)
chr6 (21-356)||(4564413-4564748)
chr6 (92-356)||(4592933-4593199)
chr6 (117-352)||(4617728-4617963)
chr6 (117-343)||(4602504-4602730)
chr6 (117-194)||(4506718-4506795)
chr6 (117-199)||(3172597-3172679)
chr6 (117-346)||(4517030-4517259)
chr6 (117-205)||(4481543-4481631)
chr6 (117-194)||(4514315-4514392)
chr6 (117-189)||(4489555-4489627)
chr6 (117-190)||(4461988-4462061)
chr6 (117-206)||(4470652-4470741)
chr6 (115-206)||(4557974-4558065)
chr6 (119-206)||(4586485-4586572)
chr6 (115-197)||(4571830-4571912)
chr6 (121-206)||(4561353-4561438)
chr6 (121-206)||(4575157-4575242)
chr6 (118-154)||(4266358-4266394)
chr6 (297-348)||(4299195-4299246)
chr6 (115-206)||(4612910-4613001)
chr6 (117-194)||(4484033-4484111)
chr6 (115-181)||(4580915-4580981)
chr6 (297-346)||(4568753-4568802)
chr6 (123-195)||(4259354-4259426)
chr6 (316-356)||(4266559-4266599)
chr6 (141-197)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (117-339)||(183-405)
[»] chr8 (4 HSPs)
chr8 (117-339)||(1674946-1675168)
chr8 (117-185)||(20863037-20863105)
chr8 (297-348)||(20863217-20863268)
chr8 (119-181)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (122-355)||(1281817-1282050)
[»] scaffold0288 (1 HSPs)
scaffold0288 (123-356)||(2918-3151)
[»] chr5 (2 HSPs)
chr5 (119-154)||(24103903-24103938)
chr5 (316-356)||(24103698-24103738)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 356
Target Start/End: Complemental strand, 4564748 - 4564413
Alignment:
Q  21 ataataccttattatatatgtatgtttttgtcgaaaacaaaatactcatgtattgacggatgtatgtataaccttcaagatattaactgatacttttgat 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  4564748 ataataccttattatatatgtatgtttttgtcgaaaacaaaatactcatgtatgtacggatgtatgtataaccttcaagatattaactgatacatttgat 4564649  T
Q  121 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtat 220  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4564648 atgcagatcagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcggttaaaggatatctttgacagtat 4564549  T
Q  221 caggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4564548 caggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcttggagactctacaattgttttgaatactttccatgaa 4564449  T
Q  321 cttgagagtgatgtaataaatgctctctcctctatg 356  Q
    ||| ||||||||||||||||||||||||||||||||    
T  4564448 ctttagagtgatgtaataaatgctctctcctctatg 4564413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 92 - 356
Target Start/End: Complemental strand, 4593199 - 4592933
Alignment:
Q  92 ccttcaagatattaact--gatacttttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaa 189  Q
    |||||||| ||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4593199 ccttcaagctattaactttgctacttttgatatgcagatgagagttatctaacaaatggatatttggaaactaaagtagattggattccaggtttgaaaa 4593100  T
Q  190 actttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggaga 289  Q
    ||||||| || ||||| ||   ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |  | |    
T  4593099 actttcggttgaaggacattgctgactatatcaggacaacagatccaaatgatattatgttaaactttgtaattgatgtggctgataaagatcataaaaa 4593000  T
Q  290 ctctacaattgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatg 356  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592999 ctctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatg 4592933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 117 - 352
Target Start/End: Complemental strand, 4617963 - 4617728
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 216  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||| |||||     
T  4617963 tgatatgcagatgagagttatctaacaaatggatgtttggaaactaaagtagattggattcccggtttgaaaaactttcggttgaaggacatcgttgact 4617864  T
Q  217 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 316  Q
     ||||||||||||| |||||||||||||||||||||| ||  | || || |  || |||  ||||     |||| |||| ||| ||||||||||||||||    
T  4617863 ttatcaggacaacaaatccaaatgatattatgttagaattctttatagaagttgcagatcgagttaacaaagacactactattcttttgaatactttcaa 4617764  T
Q  317 tgaacttgagagtgatgtaataaatgctctctcctc 352  Q
    ||||||||||||||||||||||||||||||||||||    
T  4617763 tgaacttgagagtgatgtaataaatgctctctcctc 4617728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 117 - 343
Target Start/End: Complemental strand, 4602730 - 4602504
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 216  Q
    |||||||||||||| || |||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| || ||||| ||  |||||     
T  4602730 tgatatgcagatgatagttatctaacaaatggatgtttggaaacaaaagtagattggattccaggtttgaaaaactttcggttgaaggacattcttgact 4602631  T
Q  217 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 316  Q
     ||||||||||||||||||||||||||||||| |||| ||  |  ||||    || |||| | ||  | |||||||||| ||| |||||||||||| |||    
T  4602630 atatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctactattcttttgaatacttacaa 4602531  T
Q  317 tgaacttgagagtgatgtaataaatgc 343  Q
    ||||||||||||||||||||| |||||    
T  4602530 tgaacttgagagtgatgtaatgaatgc 4602504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 4506795 - 4506718
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 194  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||    
T  4506795 tgatatgcagatgagagttatctaacaaatggatatttggacactaaggtagactggattccaggtttgagaaacttt 4506718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 3172679 - 3172597
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgatt 199  Q
    ||||||||||||||||| |||  |||||||||||||||||| ||||  || || |||||||||||||||||||||||| ||||    
T  3172679 tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaggtttgaaaaactttagatt 3172597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 346
Target Start/End: Complemental strand, 4517259 - 4517030
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 216  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || |||||||||||||||  ||||||| || |||||||  |   ||||     
T  4517259 tgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgggaaactttagactaaaggacctgcctgact 4517160  T
Q  217 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 316  Q
     ||| || || || ||||| |||||||| ||| || | ||| | ||||| ||||| ||||  |||| || ||    | | |||||||| |||||||   |    
T  4517159 ttataagaactactgatcctaatgatataatgataaaatttatcattgaagcggccgatagggttcatgaagctaattctattgttttcaatacttctga 4517060  T
Q  317 tgaacttgagagtgatgtaataaatgctct 346  Q
    ||||||||||| ||||||||||||||||||    
T  4517059 tgaacttgagaatgatgtaataaatgctct 4517030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 4481631 - 4481543
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaagga 205  Q
    ||||||||||||||||| ||| ||||| |||||||||||||  | |  ||||| |||||||||||||||||||||||| |||| |||||    
T  4481631 tgatatgcagatgagagttatttaacagatggatatttggacgcaacagtagactggattccaggtttgaaaaactttagattgaagga 4481543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 4514315 - 4514392
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 194  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || |||||||||||||||  |||||||    
T  4514315 tgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgcgaaacttt 4514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 4489555 - 4489627
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaa 189  Q
    |||||||||||||||||  |||||||| ||||| ||||||| ||||| || || |||||||||||||||||||    
T  4489555 tgatatgcagatgagagtaatctaacagatggaaatttggacactaaagttgaatggattccaggtttgaaaa 4489627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 4462061 - 4461988
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaa 190  Q
    ||||||||||||||||  ||||||||| |||||||||| || ||| | || || ||||||||||||||||||||    
T  4462061 tgatatgcagatgagatttatctaacagatggatatttagacactgaagttgactggattccaggtttgaaaaa 4461988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 4470741 - 4470652
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 206  Q
    ||||||||||||||||| ||||||| | |||||||||| || | | | || || |||||||||||||||||||||||  |||| ||||||    
T  4470741 tgatatgcagatgagagttatctaatagatggatatttcgacattgaagttgactggattccaggtttgaaaaacttcagattgaaggat 4470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 4558065 - 4557974
Alignment:
Q  115 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 206  Q
    ||||| ||| ||||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||||||| ||| | ||||||||| | ||||||    
T  4558065 tttgacatgtagatgagagttatctgacaaacggatatttggacactaaagtggattgtattccaggattgcagaactttcgactgaaggat 4557974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 4586572 - 4586485
Alignment:
Q  119 atatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 206  Q
    |||||||||| |||| ||||| ||||| ||||||||||| ||||| || || || |||||||| ||| | ||||||||| ||||||||    
T  4586572 atatgcagataagagttatctgacaaacggatatttggacactaaagtggactgtattccaggattggagaactttcgactaaaggat 4586485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 4571912 - 4571830
Alignment:
Q  115 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcga 197  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || || |||||  |||| |||||||||    
T  4571912 tttgatatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtatgccaggactgaagaactttcga 4571830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 4561438 - 4561353
Alignment:
Q  121 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 206  Q
    |||||||||||||  |||||||||||| |||| |||| || || || || ||||| |||||||||||||||||  |||| ||||||    
T  4561438 atgcagatgagagtgatctaacaaatgaatatctggacacgaaagttgactggatcccaggtttgaaaaacttcagattgaaggat 4561353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 4575242 - 4575157
Alignment:
Q  121 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 206  Q
    |||||||||||||  |||||||||||| ||||||||| || ||  | || ||||| |||||||||||||||||  |||| ||||||    
T  4575242 atgcagatgagagtgatctaacaaatgaatatttggacacaaaaattgactggatcccaggtttgaaaaacttcagattgaaggat 4575157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 4266358 - 4266394
Alignment:
Q  118 gatatgcagatgagagctatctaacaaatggatattt 154  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4266358 gatatgcagatgagagttatctaacaaatggatattt 4266394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 4299195 - 4299246
Alignment:
Q  297 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct 348  Q
    |||||||| |||||||   |||||||||||||||||||||| ||||||||||    
T  4299195 attgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctct 4299246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 4612910 - 4613001
Alignment:
Q  115 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 206  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||||| ||||| || || || |||| ||| ||| | ||||||||| | ||||||    
T  4612910 tttgacatgcagatgagagttatctgacaaacggatatttggatactaaagtggactgtattcaaggattgcagaactttcgactgaaggat 4613001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 4484033 - 4484111
Alignment:
Q  117 tgatatgcagatgagagctatctaa-caaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 194  Q
    ||||||||| || |||| ||||||| |||||| ||||||||| ||| | ||||| ||| |||||| |||||||||||||    
T  4484033 tgatatgcaaataagagttatctaagcaaatgtatatttggacactgaagtagactgggttccagatttgaaaaacttt 4484111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 4580981 - 4580915
Alignment:
Q  115 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccagg 181  Q
    |||||| | ||||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||||||||    
T  4580981 tttgatgtacagatgacagttatctcacaaacggatatttggacactaaagtagattgtattccagg 4580915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 4568802 - 4568753
Alignment:
Q  297 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctct 346  Q
    |||||||| |||||||  ||||||||||||||||||||| |||| |||||    
T  4568802 attgttttcaatacttataatgaacttgagagtgatgtagtaaaggctct 4568753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 4259354 - 4259426
Alignment:
Q  123 gcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttc 195  Q
    |||||| ||||||||||||||||||||||| |||| || || ||||| ||  |||| || ||||| |||||||    
T  4259354 gcagataagagctatctaacaaatggatatctggataccaaagtagactgtgttcctggattgaagaactttc 4259426  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 356
Target Start/End: Original strand, 4266559 - 4266599
Alignment:
Q  316 atgaacttgagagtgatgtaataaatgctctctcctctatg 356  Q
    ||||||||||||||||||| || |||||||||| |||||||    
T  4266559 atgaacttgagagtgatgttatgaatgctctctactctatg 4266599  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 4599084 - 4599028
Alignment:
Q  141 acaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcga 197  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||  || |||||||||||    
T  4599084 acaaacggatatttggaaactaaagtagattgtattcctggactgcaaaactttcga 4599028  T

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Target: scaffold0199 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 117 - 339
Target Start/End: Complemental strand, 405 - 183
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 216  Q
    |||||||||||||||||  ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| |  |||||     
T  405 tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggatgttgttgact 306  T
Q  217 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 316  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  305 gtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaa 206  T
Q  317 tgaacttgagagtgatgtaataa 339  Q
    |||||||||||||||||||||||    
T  205 tgaacttgagagtgatgtaataa 183  T

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Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 117 - 339
Target Start/End: Complemental strand, 1675168 - 1674946
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 216  Q
    |||||||||||||||||  ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| |  |||||     
T  1675168 tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggatgttgttgact 1675069  T
Q  217 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 316  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  1675068 gtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaa 1674969  T
Q  317 tgaacttgagagtgatgtaataa 339  Q
    |||||||||||||||||||||||    
T  1674968 tgaacttgagagtgatgtaataa 1674946  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 20863037 - 20863105
Alignment:
Q  117 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttg 185  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||| || ||| ||||||||||||||    
T  20863037 tgatatacagatgagagttatctaacaaatggatatttggagactaaagttgatcggattccaggtttg 20863105  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 20863217 - 20863268
Alignment:
Q  297 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct 348  Q
    |||||||| |||||||||||||| |||||||||||||| || |||| |||||    
T  20863217 attgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctct 20863268  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 16685482 - 16685544
Alignment:
Q  119 atatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccagg 181  Q
    ||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || ||||||||    
T  16685482 atatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtattccagg 16685544  T

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Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 122 - 355
Target Start/End: Complemental strand, 1282050 - 1281817
Alignment:
Q  122 tgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatc 221  Q
    |||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || || || ||||||||  |||||  ||||    
T  1282050 tgcagatgagagttatctaacaaatggatatttggaaacaaaagtagattggattccaggtttgaaaaatttccggttgaaggatattgttgactttatc 1281951  T
Q  222 aggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaac 321  Q
    ||||||| ||||| ||| |||||||||||||| ||  | |||||   ||| |||| ||||  | |||||||||| ||| |||||||||||||||||||||    
T  1281950 aggacaagagatcgaaacgatattatgttagaattctttattgaaatggcagatagagttaatagagactctactattcttttgaatactttcaatgaac 1281851  T
Q  322 ttgagagtgatgtaataaatgctctctcctctat 355  Q
    ||||||||||||||||||||||||||||||||||    
T  1281850 ttgagagtgatgtaataaatgctctctcctctat 1281817  T

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Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 356
Target Start/End: Original strand, 2918 - 3151
Alignment:
Q  123 gcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatca 222  Q
    |||||||| || ||| | |||| |||||||||||| |  || |||||||| ||||| ||| |||||||||||||| |||||||  |   ||||  ||| |    
T  2918 gcagatgatagttatttgacaagtggatatttggacaacaaagtagattgtattccgggtatgaaaaactttcgactaaaggaccttcctgactttataa 3017  T
Q  223 ggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaact 322  Q
    | |||| |||||  |||||| ||||| |||| ||| | ||||| || || ||| || |||   |||  ||| |||||||||| || ||||  ||||||||    
T  3018 gaacaaaagatctgaatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaattgtttttaacacttataatgaact 3117  T
Q  323 tgagagtgatgtaataaatgctctctcctctatg 356  Q
    ||||||||||||| | ||||| |||  |||||||    
T  3118 tgagagtgatgtactgaatgcgctccactctatg 3151  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 154
Target Start/End: Complemental strand, 24103938 - 24103903
Alignment:
Q  119 atatgcagatgagagctatctaacaaatggatattt 154  Q
    ||||||||||||||| ||||||||||||||||||||    
T  24103938 atatgcagatgagagttatctaacaaatggatattt 24103903  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 24103738 - 24103698
Alignment:
Q  316 atgaacttgagagtgatgtaataaatgctctctcctctatg 356  Q
    ||||||||||||||||||| || |||||||||| |||||||    
T  24103738 atgaacttgagagtgatgttatgaatgctctctactctatg 24103698  T

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