View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_high_15 (Length: 392)
Name: NF11982_high_15
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 8554790 - 8554412
Alignment:
| Q |
1 |
caaagagcaccaaacaacaatactgttatttctgctgctaattggaaacctgatcatcatgaacaacaacaaaacattaatgttcataccaaccattcta |
100 |
Q |
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| T |
8554790 |
caaagagcaccaaacaacaatactattatttctgctgctaattggaaacctgatcatcatgaacaacaacaaaacattaatgttcataccaaccattcta |
8554691 |
T |
|
| Q |
101 |
cttacaacatttcacctgctggtatattctttttcctttt-gagagaagnnnnnnnnn-gtaactaattgattaaatattatatactatatcctatatta |
198 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554690 |
cttacaacatttcatctgctggtatattctttttcctttttgagacaagaaaaaaaaaagtaactaattgattaaatattatatactatatcctatatta |
8554591 |
T |
|
| Q |
199 |
atttttgtgtgtgtgtttatttagggctttcttctgcttcatgttcttctgctgagatggttactgtaggccagattggtaactatggatatggatctgt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554590 |
atttttgtgtgtgtgtttatttagggctttcttctgcttcatgttcttctgctgagatggttactgtaggccagattggtaactatggatatggatctgt |
8554491 |
T |
|
| Q |
299 |
ccccatggaaaagagttttagggtaagttattgacatgaaaaactttatactattatttcaagttttctttccctttgc |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554490 |
ccccatggaaaagagttttagggtaagttattgacatgaaaaactttatactattatttcaagttttctttccctttgc |
8554412 |
T |
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