View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982_high_2 (Length: 689)

Name: NF11982_high_2
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982_high_2
NF11982_high_2
[»] chr3 (24 HSPs)
chr3 (18-332)||(45582756-45583088)
chr3 (18-330)||(37022098-37022428)
chr3 (413-622)||(45583200-45583424)
chr3 (526-622)||(33955829-33955938)
chr3 (526-622)||(37964814-37964923)
chr3 (526-618)||(4066721-4066826)
chr3 (526-622)||(28418372-28418481)
chr3 (526-622)||(33957204-33957313)
chr3 (471-528)||(37023812-37023869)
chr3 (526-574)||(47334420-47334468)
chr3 (528-622)||(22397847-22397954)
chr3 (526-622)||(3344951-3345060)
chr3 (477-527)||(37087111-37087161)
chr3 (526-622)||(23302237-23302346)
chr3 (526-622)||(23302883-23302992)
chr3 (477-526)||(45580107-45580156)
chr3 (530-573)||(1003036-1003079)
chr3 (472-527)||(6247382-6247437)
chr3 (530-573)||(26706139-26706182)
chr3 (530-573)||(35350828-35350871)
chr3 (383-413)||(37022002-37022032)
chr3 (383-413)||(45583150-45583180)
chr3 (472-526)||(52986254-52986308)
chr3 (472-525)||(2213922-2213975)
[»] chr8 (26 HSPs)
chr8 (18-332)||(35562987-35563318)
chr8 (223-332)||(14055168-14055277)
chr8 (78-231)||(14054634-14054787)
chr8 (526-622)||(6416607-6416716)
chr8 (526-622)||(18385622-18385731)
chr8 (468-526)||(14055453-14055511)
chr8 (526-618)||(9220057-9220162)
chr8 (526-622)||(12501691-12501800)
chr8 (526-622)||(39622121-39622230)
chr8 (468-526)||(14054117-14054175)
chr8 (468-523)||(35562246-35562301)
chr8 (413-525)||(35563429-35563542)
chr8 (478-526)||(28301659-28301707)
chr8 (526-574)||(29089133-29089181)
chr8 (472-527)||(45021652-45021707)
chr8 (476-526)||(36984145-36984195)
chr8 (472-526)||(39582003-39582057)
chr8 (472-525)||(23753259-23753312)
chr8 (526-574)||(16888801-16888849)
chr8 (478-526)||(28301343-28301391)
chr8 (574-622)||(31726230-31726278)
chr8 (47-77)||(14054585-14054615)
chr8 (472-526)||(26830324-26830378)
chr8 (472-526)||(26831447-26831501)
chr8 (476-526)||(44296719-44296769)
chr8 (474-526)||(41944354-41944406)
[»] chr7 (16 HSPs)
chr7 (526-622)||(34643827-34643936)
chr7 (526-622)||(42049331-42049440)
chr7 (526-622)||(46804789-46804898)
chr7 (526-622)||(6612680-6612789)
chr7 (526-622)||(21954185-21954294)
chr7 (526-617)||(9179107-9179211)
chr7 (472-526)||(7314254-7314308)
chr7 (478-526)||(46469140-46469188)
chr7 (579-617)||(47400838-47400876)
chr7 (477-526)||(42337068-42337117)
chr7 (526-570)||(47400772-47400816)
chr7 (472-526)||(16957266-16957320)
chr7 (478-528)||(35960213-35960263)
chr7 (477-526)||(17352889-17352938)
chr7 (472-528)||(40319548-40319604)
chr7 (477-525)||(42338160-42338208)
[»] chr5 (11 HSPs)
chr5 (526-622)||(5812548-5812657)
chr5 (526-622)||(16478202-16478311)
chr5 (526-622)||(39565227-39565336)
chr5 (528-622)||(40830502-40830609)
chr5 (526-622)||(22496972-22497081)
chr5 (528-622)||(1598674-1598781)
chr5 (472-527)||(38107138-38107193)
chr5 (468-529)||(4533129-4533190)
chr5 (477-526)||(2024305-2024354)
chr5 (477-526)||(4534072-4534121)
chr5 (472-528)||(42877086-42877142)
[»] chr4 (18 HSPs)
chr4 (526-622)||(5943889-5943998)
chr4 (526-622)||(34802077-34802185)
chr4 (472-527)||(10616093-10616148)
chr4 (526-622)||(48425959-48426068)
chr4 (526-617)||(25887440-25887544)
chr4 (526-574)||(36353220-36353268)
chr4 (530-618)||(48945152-48945253)
chr4 (471-527)||(2420974-2421030)
chr4 (574-622)||(27024593-27024641)
chr4 (472-525)||(56113760-56113813)
chr4 (472-524)||(6047064-6047116)
chr4 (478-526)||(34155897-34155945)
chr4 (478-526)||(56112694-56112742)
chr4 (472-527)||(18705398-18705453)
chr4 (478-525)||(49700727-49700774)
chr4 (477-526)||(22813297-22813346)
chr4 (468-527)||(22812631-22812691)
chr4 (468-524)||(46170300-46170356)
[»] chr1 (22 HSPs)
chr1 (526-622)||(43643190-43643299)
chr1 (526-622)||(28645798-28645907)
chr1 (531-622)||(2023072-2023176)
chr1 (526-622)||(24775478-24775587)
chr1 (526-622)||(32523993-32524102)
chr1 (531-622)||(21332871-21332975)
chr1 (526-621)||(38984565-38984673)
chr1 (526-618)||(18410254-18410359)
chr1 (531-622)||(45536899-45537003)
chr1 (526-574)||(2840437-2840485)
chr1 (526-574)||(20274496-20274544)
chr1 (574-622)||(49004907-49004955)
chr1 (472-526)||(1531634-1531688)
chr1 (472-538)||(1532578-1532644)
chr1 (472-526)||(16273729-16273783)
chr1 (472-526)||(16276969-16277023)
chr1 (574-622)||(42829936-42829984)
chr1 (529-568)||(15835649-15835688)
chr1 (472-526)||(22778642-22778696)
chr1 (472-526)||(24037902-24037956)
chr1 (472-524)||(29183460-29183512)
chr1 (528-572)||(49004970-49005013)
[»] chr6 (9 HSPs)
chr6 (526-622)||(22510306-22510415)
chr6 (526-622)||(18903142-18903251)
chr6 (526-622)||(19420113-19420222)
chr6 (472-529)||(20583013-20583070)
chr6 (475-527)||(15976610-15976662)
chr6 (472-527)||(15981023-15981078)
chr6 (526-622)||(19420620-19420729)
chr6 (468-528)||(14456192-14456252)
chr6 (472-525)||(20583979-20584032)
[»] chr2 (12 HSPs)
chr2 (526-622)||(40263449-40263558)
chr2 (474-533)||(3627607-3627666)
chr2 (526-618)||(4651458-4651563)
chr2 (472-527)||(42700948-42701003)
chr2 (472-526)||(27848335-27848389)
chr2 (526-622)||(3554993-3555102)
chr2 (527-622)||(6904318-6904426)
chr2 (478-526)||(27849394-27849442)
chr2 (527-574)||(4720878-4720925)
chr2 (530-573)||(39122520-39122563)
chr2 (574-622)||(4720938-4720986)
chr2 (473-525)||(33075186-33075238)
[»] scaffold0009 (1 HSPs)
scaffold0009 (526-622)||(198918-199027)
[»] scaffold0088 (4 HSPs)
scaffold0088 (574-622)||(10676-10724)
scaffold0088 (574-622)||(1342-1390)
scaffold0088 (574-622)||(8732-8780)
scaffold0088 (574-622)||(25227-25275)
[»] scaffold0368 (1 HSPs)
scaffold0368 (527-622)||(9932-10040)
[»] scaffold1289 (1 HSPs)
scaffold1289 (574-622)||(279-327)
[»] scaffold0446 (1 HSPs)
scaffold0446 (478-526)||(11560-11608)
[»] scaffold0492 (1 HSPs)
scaffold0492 (529-568)||(12369-12408)
[»] scaffold0008 (1 HSPs)
scaffold0008 (472-526)||(268410-268464)
[»] scaffold1212 (1 HSPs)
scaffold1212 (477-526)||(2134-2183)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 45582756 - 45583088
Alignment:
Q  18 tgggagatgtatttgatagggattgaatacaaattttgtttcctaaaaaacgtgatgttgttgttg------------------atgggaacttgaattc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||    
T  45582756 tgggagatgtatttgatagggattgaatacaaattttgtttcctaaaaaacgtgatgttgttgttggtggttttcatcttgttgatgggaacttgaattc 45582855  T
Q  100 attgttgcaatagatgagattgggaaggaaaatatatgacnnnnnnnnnnnnnnnnnttgcttatggtttctcgctgttgaagaaggaaaaagggcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||    
T  45582856 attgttgcaatagatgagattgggaaggaaaatatatgacaaaaaaagaagaaaaagttgcttatggtttctcgctgttgaagaaggaaaaagggcaaat 45582955  T
Q  200 gttatagaatttcctaattattgaaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagtt 299  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45582956 gttatagaatttcctaataattgaaaaagaaatgttatgaaaattttgagaaggataccatgaacatattttttgaatgaagatgaatgataatgtagtt 45583055  T
Q  300 gctgctattgccgtgcttggttctccctcttcc 332  Q
    |||||||||| ||||||||||||||||||||||    
T  45583056 gctgctattgtcgtgcttggttctccctcttcc 45583088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 37022428 - 37022098
Alignment:
Q  18 tgggagatgtatttgatagggattgaatacaaattttgtttcctaaaaaacgtgatgttgttgttgatgg------------------gaacttgaattc 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||                  |||||||||||     
T  37022428 tgggagatgtatttgatagggattgaatacaaattttgttttctaaaaaacgtgatgttgttgttggtggttttcatcttgttgatgagaacttgaatta 37022329  T
Q  100 attgttgcaatagatgagattgggaaggaaaatatatgacnnnnnnnnnnnnnnnnnttgcttatggtttctcgctgttgaagaaggaaaaagggcaaat 199  Q
    |||||||||||||||| |||||||||||||||||||||||                 |||||||||||||||||||||||||||| ||||||||||||||    
T  37022328 attgttgcaatagatgcgattgggaaggaaaatatatgacaaaaaaagaagaaaaagttgcttatggtttctcgctgttgaagaaagaaaaagggcaaat 37022229  T
Q  200 gttatagaatttcctaattattgaaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagtt 299  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  37022228 gttatagaatttcctaattattgaaaaagaaatgtaatgaaaattttgagaatgataccatgaacatattatttgaatggagatgaatgataatgtagtt 37022129  T
Q  300 gctgctattgccgtgcttggttctccctctt 330  Q
    |||| |||| | |||||||||||||||||||    
T  37022128 gctgttattcctgtgcttggttctccctctt 37022098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 413 - 622
Target Start/End: Original strand, 45583200 - 45583424
Alignment:
Q  413 aaattgatggtttacaaaagggttagacatagg-ggtcactattaccannnnnnnnaataggggtc-aaaattgcaatttttgcaaacttaggaggtaga 510  Q
    ||||||| | |||||||||||| |||||||||| ||||||| ||||||        |||||||| | |||||||||| ||||||||||||||| | ||||    
T  45583200 aaattgacgttttacaaaaggggtagacataggaggtcacttttaccattttttttaatagggggccaaaattgcaacttttgcaaacttaggggttaga 45583299  T
Q  511 aagtgtgtttaagccttataattattaagtttgtattaaaaattagaagaaatttttggaac-------------aattatgatgatgtggacatcttta 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  45583300 aagtgtgtttaagccttataattattaagtttgtattaaaaattagaagaaatttttggaacaaatgccaagtagaattatgatgatgtggacatcttta 45583399  T
Q  598 aaggagaggattttggaataggcta 622  Q
    || || |||||||| ||| ||||||    
T  45583400 aaagaaaggattttagaagaggcta 45583424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 33955829 - 33955938
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  33955829 ttataattaataagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttg 33955928  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  33955929 gaataggcta 33955938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 37964923 - 37964814
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| ||||||| ||||||    
T  37964923 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtaggattatgatgatgtggacatctttagaggagagaattttg 37964824  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  37964823 gaataggcta 37964814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 618
Target Start/End: Original strand, 4066721 - 4066826
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||| ||||||| ||||||    
T  4066721 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtaggattatgatgatgtggacatctttagaggagagaattttg 4066820  T
Q  613 gaatag 618  Q
    ||||||    
T  4066821 gaatag 4066826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 28418372 - 28418481
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||| ||||||| ||||||    
T  28418372 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtaggattatgatgatgtggacatctttagaggagagaattttg 28418471  T
Q  613 gaataggcta 622  Q
    ||||| ||||    
T  28418472 gaatatgcta 28418481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 33957204 - 33957313
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||             |||||||||||||| ||||||||| ||||||||||||||    
T  33957204 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaagattatgatgatgtgaacatctttagaggagaggattttg 33957303  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  33957304 aaataggcta 33957313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 37023812 - 37023869
Alignment:
Q  471 aggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  37023812 aggggccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcctta 37023869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 47334420 - 47334468
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  47334420 ttataattattaagtttgtattaaaaattgggagaaatttttggaacaa 47334468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 528 - 622
Target Start/End: Complemental strand, 22397954 - 22397847
Alignment:
Q  528 ataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttgga 614  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||| |||| ||||||||| |    
T  22397954 ataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggaaaggattttgaa 22397855  T
Q  615 ataggcta 622  Q
    ||| ||||    
T  22397854 ataagcta 22397847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 3344951 - 3345060
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||||||||||| ||||  ||||||||||||||||             |||||||| |||||||||||||| || |||||||||||    
T  3344951 ttataattattaagcttgtattaaaatttaggggaaatttttggaacaaatgccaagtaggattatgatggtgtggacatctttagagaagaggattttg 3345050  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  3345051 gaataggcta 3345060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 477 - 527
Target Start/End: Complemental strand, 37087161 - 37087111
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  37087161 caaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 37087111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 23302346 - 23302237
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| || |||||| |||||| |||||||||||||||||             ||| ||||||||| ||||||||| ||||||||||||||    
T  23302346 ttataattattaagcttttattaacaattaggagaaatttttggaacaaatgccaagtaggattaggatgatgtgaacatctttagaggagaggattttg 23302247  T
Q  613 gaataggcta 622  Q
    ||||| ||||    
T  23302246 gaataagcta 23302237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 23302992 - 23302883
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||| ||||| |||||| |||||||||||||||||             ||| ||||||||||||||||||| |||||||||||||     
T  23302992 ttataattattaagcttgcattaataattaggagaaatttttggaacaaatgccaagtaggattaggatgatgtggacatctttagaggagaggatttta 23302893  T
Q  613 gaataggcta 622  Q
    ||||| ||||    
T  23302892 gaataagcta 23302883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 45580156 - 45580107
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| |||||||||||||||  ||| |||||||||||||||||    
T  45580156 caaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagcct 45580107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 1003036 - 1003079
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaaca 573  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||    
T  1003036 aattattaagcttgtattaaaaattaggagaaattttgggaaca 1003079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 6247437 - 6247382
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||||||||||| ||||||||||||||| || | |||||| |||| ||||||    
T  6247437 ggggtcaaaattgcaacttttgcaaacttagggggcaaaaagtgcgttttagcctt 6247382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 26706139 - 26706182
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaaca 573  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||    
T  26706139 aattattaagcttgtattaaaaattaggagaaattttgggaaca 26706182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 35350828 - 35350871
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaaca 573  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||    
T  35350828 aattattaagcttgtattaaaaattaggagaaattttgggaaca 35350871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 413
Target Start/End: Complemental strand, 37022032 - 37022002
Alignment:
Q  383 ttaaataactaattacacatgtggcatgcca 413  Q
    |||||||||||||||||||||||||||||||    
T  37022032 ttaaataactaattacacatgtggcatgcca 37022002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 383 - 413
Target Start/End: Original strand, 45583150 - 45583180
Alignment:
Q  383 ttaaataactaattacacatgtggcatgcca 413  Q
    |||||||||||||||||||||||||||||||    
T  45583150 ttaaataactaattacacatgtggcatgcca 45583180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 52986254 - 52986308
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||||| || |||| ||||||||||  ||| |||||||||||||||||    
T  52986254 ggggtcaaaattgtaacttttacaaacttagggagtaaaaagtgtgtttaagcct 52986308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 2213975 - 2213922
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||||||||||||||| ||||| ||||||||| |||  |||||| |||||||||    
T  2213975 ggggtcaaaattgcaacttttgaaaacttagggggtcaaaagtgggtttaagcc 2213922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 35562987 - 35563318
Alignment:
Q  18 tgggagatgtatttgatagggattgaatacaaattttgtttcctaaaaaacgtgatgttgttgttgatgg------------------gaacttgaattc 99  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||                  ||||||||||||    
T  35562987 tgggagatgtatttgatagggattgaatacaaatattgtttcttaaaaaacgtgatgttgttgttggtggttttcatcttgctgttgggaacttgaattc 35563086  T
Q  100 attgttgcaatagatgagattgggaaggaaaatatatgacnnnnnnnnnnnnnnnnnttgcttatggtttctcgctgttgaagaaggaaaaagggcaaat 199  Q
    ||||||||||||||||||||||||||||||||||||||||                 ||| |||||||||||||||||||||||||||||||||||||||    
T  35563087 attgttgcaatagatgagattgggaaggaaaatatatgacaaaaaaagaagaaaaagttgtttatggtttctcgctgttgaagaaggaaaaagggcaaat 35563186  T
Q  200 gttatagaatttcctaattattgaaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagtt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35563187 gttatagaatttcctaattattgaaaaagaaatgttatgaaaattttgagaatgataccatgaacata-tttttgaatgaagatgaatgataatgtagtt 35563285  T
Q  300 gctgctattgccgtgcttggttctccctcttcc 332  Q
    |||||||||||||||||||||||||||||||||    
T  35563286 gctgctattgccgtgcttggttctccctcttcc 35563318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 14055168 - 14055277
Alignment:
Q  223 aaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagttgctgctattgccgtgcttggttc 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14055168 aaaaagaaatgttatgaaaattttgagaatgataccatgaacatattttttgaatgaagatgaatgataatgtagttgctcctattgccgtgcttggttc 14055267  T
Q  323 tccctcttcc 332  Q
    ||||||||||    
T  14055268 tccctcttcc 14055277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 78 - 231
Target Start/End: Original strand, 14054634 - 14054787
Alignment:
Q  78 ttgttgatgggaacttgaattcattgttgcaatagatgagattgggaaggaaaatatatgacnnnnnnnnnnnnnnnnnttgcttatggtttctcgctgt 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||| |||||    
T  14054634 ttgttgatgggaacttgaattcattgttgcaatagatgagattgggaaggaaaatatatgacaaaaaaagaaggaaaagttgcttatggtttcttgctgt 14054733  T
Q  178 tgaagaaggaaaaagggcaaatgttatagaatttcctaattattgaaaaagaaa 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14054734 tgaagaaggaaaaagggcaaatgttatagaatttcctaattattgaaaaagaaa 14054787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 6416716 - 6416607
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||    
T  6416716 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggattttg 6416617  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  6416616 aaataggcta 6416607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 18385622 - 18385731
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||    
T  18385622 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggattttg 18385721  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  18385722 aaataggcta 18385731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 468 - 526
Target Start/End: Original strand, 14055453 - 14055511
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  14055453 aataggggccaaaattgcaacttttgcaaacttagggggtagaaagtgtgtttaagcct 14055511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 618
Target Start/End: Complemental strand, 9220162 - 9220057
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||             |||||||||||||||||||||||| ||||||| ||||||    
T  9220162 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtaggattatgatgatgtggacatctttagaggagagaattttg 9220063  T
Q  613 gaatag 618  Q
    ||||||    
T  9220062 gaatag 9220057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 12501691 - 12501800
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||             ||||||||||||||||||| |||| ||||||||||||||    
T  12501691 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatttttagaggagaggattttg 12501790  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  12501791 aaataggcta 12501800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 39622121 - 39622230
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||             |||||| ||||||||||||||||| || |||||||||||    
T  39622121 ttataattattaagtttgtattaaaaattaggagaaacttttggaacaaatgccaagtatgattatggtgatgtggacatctttagagaagaggattttg 39622220  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  39622221 gaataggcta 39622230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 468 - 526
Target Start/End: Complemental strand, 14054175 - 14054117
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  14054175 aataggagccaaaattgcaacttttgcaaacttaggaggtaaaaagtgtgtttaagcct 14054117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 468 - 523
Target Start/End: Complemental strand, 35562301 - 35562246
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaag 523  Q
    |||||||||||||||||||| ||||||||||||||  |||| ||||||||||||||    
T  35562301 aataggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtgtgtttaag 35562246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 525
Target Start/End: Original strand, 35563429 - 35563542
Alignment:
Q  413 aaattgatggtttacaaaagggttagacataggggtcactattaccannnnnnnnaataggg-gtcaaaattgcaatttttgcaaacttaggaggtagaa 511  Q
    ||||||| | |||||||||||| ||||||||||||||||| ||||||        ||||||| |  |||||||||| |||||||||||||||  ||||||    
T  35563429 aaattgacgttttacaaaaggggtagacataggggtcacttttaccattttttttaatagggagctaaaattgcaacttttgcaaacttagggagtagaa 35563528  T
Q  512 agtgtgtttaagcc 525  Q
    | || |||||||||    
T  35563529 aatgcgtttaagcc 35563542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 28301659 - 28301707
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  28301659 aaaattgcaacttttgcaaacttaggaggtaaaaagtgcgtttaagcct 28301707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 29089133 - 29089181
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  29089133 ttataattattaagcttgtattaacaattaggagaaatttttggaacaa 29089181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 45021652 - 45021707
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||||||||||| |||| |||||||||| |||| |||||| |||||||||||    
T  45021652 ggggtcaaaattgcaacttttacaaacttagggggtaaaaagtgagtttaagcctt 45021707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 36984195 - 36984145
Alignment:
Q  476 tcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||| |||||||||||||| ||||| |||||| ||||||||||    
T  36984195 tcaaaattgcaacttttgcaaacttagtaggtaaaaagtgcgtttaagcct 36984145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 39582003 - 39582057
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| |||||||||||||||  ||| |||||||||||||||||    
T  39582003 ggggccaaaattgcaacttttgcaaacttagggagtaaaaagtgtgtttaagcct 39582057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 23753312 - 23753259
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||| ||||||||||| |||| |||||||||| |||| ||||||||||||||||    
T  23753312 ggggccaaaattgcaacttttacaaacttagggggtaaaaagtgtgtttaagcc 23753259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 16888801 - 16888849
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||| ||||||||||||    
T  16888801 ttataattattaagcttgtattaacaattaggagaattttttggaacaa 16888849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 28301391 - 28301343
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| |||| ||||| ||||||||| |||||||||||||||||    
T  28301391 aaaattgcaactttttcaaacataggaggtaaaaagtgtgtttaagcct 28301343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 622
Target Start/End: Complemental strand, 31726278 - 31726230
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    |||| ||||||||||||||||||| | ||||||||||||||||| ||||    
T  31726278 attaggatgatgtggacatctttagacgagaggattttggaataagcta 31726230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 77
Target Start/End: Original strand, 14054585 - 14054615
Alignment:
Q  47 caaattttgtttcctaaaaaacgtgatgttg 77  Q
    |||||||||||||||||||||||||||||||    
T  14054585 caaattttgtttcctaaaaaacgtgatgttg 14054615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 26830378 - 26830324
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||| |  ||||||||| |||| |||| |||||||||||||||||    
T  26830378 ggggtcaaaattgctacgtttgcaaacctagggggtaaaaagtgtgtttaagcct 26830324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 26831447 - 26831501
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||| | | ||||||||||||||| |||| |||||||||||||||||    
T  26831447 ggggccaaaattactacttttgcaaacttagggggtaaaaagtgtgtttaagcct 26831501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 476 - 526
Target Start/End: Complemental strand, 44296769 - 44296719
Alignment:
Q  476 tcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||| ||||||||||||| | |||| |||||| ||||||||||    
T  44296769 tcaaaattgcaacttttgcaaacttaaggggtaaaaagtgcgtttaagcct 44296719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 41944406 - 41944354
Alignment:
Q  474 ggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||| ||||||||||||||  |||| ||||||  |||||||||    
T  41944406 ggtcaaaattgcaacttttgcaaacttagagggtaaaaagtgaatttaagcct 41944354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 34643827 - 34643936
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||    
T  34643827 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggattttg 34643926  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  34643927 aaataggcta 34643936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 42049440 - 42049331
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||    
T  42049440 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggattttg 42049341  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  42049340 aaataggcta 42049331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 46804898 - 46804789
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  46804898 ttataattattaagtttgtattaaaaattaggagaaacttttggaacaaatgccaagtatgattatgatgatgtggacatctttagaggagaggattttg 46804799  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  46804798 gaataggcta 46804789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 6612789 - 6612680
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| ||||||| ||||||    
T  6612789 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtaggattatgatgatgtggacatctttagaggagagaattttg 6612690  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  6612689 gaataggcta 6612680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 21954185 - 21954294
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  21954185 ttataattattaagcttgtattaaaaattaggagaattttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttg 21954284  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  21954285 gaataggcta 21954294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 526 - 617
Target Start/End: Original strand, 9179107 - 9179211
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaac-------------aattatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||             ||||||||||||||||||||||||| || |||||||||||    
T  9179107 ttataattattaagcttgtattaaaaattatgagaaatttttggaacaaaagccaagtaaaattatgatgatgtggacatctttagagaagaggattttg 9179206  T
Q  613 gaata 617  Q
    |||||    
T  9179207 gaata 9179211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 7314254 - 7314308
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  7314254 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgtgtttaagcct 7314308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 46469188 - 46469140
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||    
T  46469188 aaaattgcaacttttgcaaacttaaggggtagaaagtgtgtttaagcct 46469140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 579 - 617
Target Start/End: Original strand, 47400838 - 47400876
Alignment:
Q  579 gatgatgtggacatctttaaaggagaggattttggaata 617  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  47400838 gatgatgtggacatctttagaggagaggattttggaata 47400876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 42337117 - 42337068
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  42337117 caaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 42337068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 570
Target Start/End: Original strand, 47400772 - 47400816
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttgga 570  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||    
T  47400772 ttataattattaagtttatattaacaattaggagaaatttttgga 47400816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 16957266 - 16957320
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||| |||||    
T  16957266 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcct 16957320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 528
Target Start/End: Original strand, 35960213 - 35960263
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    |||||||||| ||||||||| ||||| |||| |||||| ||||||||||||    
T  35960213 aaaattgcaacttttgcaaaattagggggtaaaaagtgggtttaagcctta 35960263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 17352938 - 17352889
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||| ||| ||||||||||||||| | || |||||||||||||||||    
T  17352938 caaaattacaacttttgcaaacttaggggataaaaagtgtgtttaagcct 17352889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 40319604 - 40319548
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    |||| ||||||||||| ||||||||| ||||  |||| |||||| ||||||||||||    
T  40319604 ggggccaaaattgcaacttttgcaaagttagagggtaaaaagtgcgtttaagcctta 40319548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 42338160 - 42338208
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    ||||||||||| ||||||||||||||| || | |||||| |||||||||    
T  42338160 caaaattgcaacttttgcaaacttagggggcaaaaagtgagtttaagcc 42338208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 5812548 - 5812657
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  5812548 ttataattattaagtttgtattaaaaattaggagaaacttttggaacaaatgccaagtatgattatgatgatgtggacatctttagaggagaggattttg 5812647  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  5812648 gaataggcta 5812657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 16478311 - 16478202
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||    
T  16478311 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggattttg 16478212  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  16478211 aaataggcta 16478202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 39565227 - 39565336
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  39565227 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtaggattatgatgatgtggacatctttagaggagaggattttg 39565326  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  39565327 gaataggcta 39565336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 622
Target Start/End: Complemental strand, 40830609 - 40830502
Alignment:
Q  528 ataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttgga 614  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| ||||||||||||||||    
T  40830609 ataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttgga 40830510  T
Q  615 ataggcta 622  Q
    ||||||||    
T  40830509 ataggcta 40830502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 22496972 - 22497081
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||             |||||||||||||||||| ||||  ||||||||||||||    
T  22496972 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaaataggattatgatgatgtggacacctttggaggagaggattttg 22497071  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  22497072 gaataggcta 22497081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 622
Target Start/End: Original strand, 1598674 - 1598781
Alignment:
Q  528 ataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttgga 614  Q
    ||||| |||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||| ||| ||||||||||||||||    
T  1598674 ataataattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtatgattatgatgatgtggacatcattagaggagaggattttgga 1598773  T
Q  615 ataggcta 622  Q
    ||||||||    
T  1598774 ataggcta 1598781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 38107193 - 38107138
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  38107193 ggggtcaaaattgcaatttttgcaaacttaggaggtaaaaagtggatttaagcctt 38107138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 468 - 529
Target Start/End: Complemental strand, 4533190 - 4533129
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagccttat 529  Q
    |||||||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||||    
T  4533190 aataggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagccttat 4533129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 2024305 - 2024354
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  2024305 caaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagcct 2024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 4534072 - 4534121
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||||| |||| ||||||  |||||||||    
T  4534072 caaaattgcaacttttgcaaacttagggggtaaaaagtgaatttaagcct 4534121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 42877086 - 42877142
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    |||||||||||| ||| ||||||||||||| |||| | |||||| |||| |||||||    
T  42877086 ggggtcaaaattacaacttttgcaaacttaagaggcaaaaagtgcgttttagcctta 42877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 5943998 - 5943889
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||    
T  5943998 ttataattattaagcttgtattaaaaattagaagaaatttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggattttg 5943899  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  5943898 aaataggcta 5943889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 34802185 - 34802077
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||||||||||| |||| |||||||||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  34802185 ttataattattaagcttgtattaaaa-ttaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttg 34802087  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  34802086 gaataggcta 34802077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 10616093 - 10616148
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  10616093 ggggtcaaaattgcaacttttgcaaatttagggggtagaaagtgtgtttaagcctt 10616148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 48426068 - 48425959
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||             ||||| |||||||||||||||||| ||||||| ||||||    
T  48426068 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccacgtaggattattatgatgtggacatctttagaggagagaattttg 48425969  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  48425968 aaataggcta 48425959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 526 - 617
Target Start/End: Complemental strand, 25887544 - 25887440
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||             |||| ||||||||||||||||||| ||||||||||||||    
T  25887544 ttataattattaagcttgtattaacaattaggagaaatttttggaacaaatgtcaagtaggattaggatgatgtggacatctttagaggagaggattttg 25887445  T
Q  613 gaata 617  Q
    |||||    
T  25887444 gaata 25887440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 526 - 574
Target Start/End: Original strand, 36353220 - 36353268
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  36353220 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaa 36353268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 618
Target Start/End: Complemental strand, 48945253 - 48945152
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttggaat 616  Q
    |||||||||| |||||||||||||||| || ||||||||||||||             ||||||||||||||||||||||||||||||| ||||| ||||    
T  48945253 aattattaaggttgtattaaaaattaggaggaatttttggaacaaatgccaaataggattatgatgatgtggacatctttaaaggagagaattttagaat 48945154  T
Q  617 ag 618  Q
    ||    
T  48945153 ag 48945152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 527
Target Start/End: Original strand, 2420974 - 2421030
Alignment:
Q  471 aggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||| |||||||||| |||||||||||||   |||||||||||||||||||||||    
T  2420974 aggggttaaaattgcaacttttgcaaacttaaagggtagaaagtgtgtttaagcctt 2421030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 27024593 - 27024641
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  27024593 attatgatgatgtagacatatttaaaggagaggattttagaataggcta 27024641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 56113760 - 56113813
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||    
T  56113760 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcc 56113813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 524
Target Start/End: Complemental strand, 6047116 - 6047064
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagc 524  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| ||||||||    
T  6047116 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgggtttaagc 6047064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 34155945 - 34155897
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| ||||| ||||||||| |||| |||||||||||||||||    
T  34155945 aaaattgcaacttttgtaaacttagggggtaaaaagtgtgtttaagcct 34155897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 56112742 - 56112694
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  56112742 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 56112694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 18705398 - 18705453
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||||||||| | ||||||||||||||| |||| | |||| |||||||||||    
T  18705398 ggggtcaaaattgctacttttgcaaacttagggggtaaatagtgcgtttaagcctt 18705453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 49700727 - 49700774
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||||||||| |||||||||| |||| |||| ||||||||||||||||    
T  49700727 aaaattgcaacttttgcaaacatagggggtaaaaagtgtgtttaagcc 49700774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Original strand, 22813297 - 22813346
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||| |||||  |||||| ||||||||||    
T  22813297 caaaattgcaacttttgcaaacttaagaggtcaaaagtgggtttaagcct 22813346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 527
Target Start/End: Complemental strand, 22812691 - 22812631
Alignment:
Q  468 aatagggg-tcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||||||| |||||||||||| ||||||||||||| | |||  |||||| |||||||||||    
T  22812691 aataggggatcaaaattgcaacttttgcaaacttaaggggtcaaaagtgggtttaagcctt 22812631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 46170356 - 46170300
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagc 524  Q
    |||||||  ||||||||||| ||  |||||||||||||||| |||||| ||||||||    
T  46170356 aatagggaccaaaattgcaacttccgcaaacttaggaggtaaaaagtgggtttaagc 46170300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 43643190 - 43643299
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  43643190 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtgggattatgatgatgtggacatctttagaggagaggattttg 43643289  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  43643290 gaataggcta 43643299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 28645798 - 28645907
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||||             ||||||||||||||||||||||| ||||||||||||||    
T  28645798 ttataattattaagtttgtattaaaaattaggagaaacttttgtaacaaatgccaagtatgattatgatgatgtggacatctttagaggagaggattttg 28645897  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  28645898 gaataggcta 28645907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 531 - 622
Target Start/End: Complemental strand, 2023176 - 2023072
Alignment:
Q  531 attattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttggaata 617  Q
    ||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| |||||||||||||||||||    
T  2023176 attattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaata 2023077  T
Q  618 ggcta 622  Q
    |||||    
T  2023076 ggcta 2023072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 24775587 - 24775478
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| ||||||||||| || ||             ||||||||||||||||||||||| ||||||||||||||    
T  24775587 ttataattattaagcttgtattaaaaattaggagaaatttttgaaaaaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttg 24775488  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  24775487 gaataggcta 24775478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 32523993 - 32524102
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||             |||||||||||||||||||||||| |||||||||||||     
T  32523993 ttataattattaagcttgtattaaaaattagaagaagtttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggatttta 32524092  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  32524093 aaataggcta 32524102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 531 - 622
Target Start/End: Original strand, 21332871 - 21332975
Alignment:
Q  531 attattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttggaata 617  Q
    ||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| ||||||||||||||||||     
T  21332871 attattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttggaatg 21332970  T
Q  618 ggcta 622  Q
    |||||    
T  21332971 ggcta 21332975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 526 - 621
Target Start/End: Original strand, 38984565 - 38984673
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  38984565 ttataattattaagcttgtattaaaaattaggagaaatctttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttg 38984664  T
Q  613 gaataggct 621  Q
     ||||||||    
T  38984665 aaataggct 38984673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 618
Target Start/End: Complemental strand, 18410359 - 18410254
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||             |||||||||||||||||||||||| |||| |||||||||    
T  18410359 ttataattattaagcttgtattaaaaattagaagaagtttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggaaaggattttg 18410260  T
Q  613 gaatag 618  Q
     |||||    
T  18410259 aaatag 18410254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 531 - 622
Target Start/End: Complemental strand, 45537003 - 45536899
Alignment:
Q  531 attattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttggaata 617  Q
    ||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| |||| || |||||||||||    
T  45537003 attattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggaaagaattttggaata 45536904  T
Q  618 ggcta 622  Q
    |||||    
T  45536903 ggcta 45536899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 2840485 - 2840437
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  2840485 ttataattattaagcttgtattaaaaattaggagaaatatttggaacaa 2840437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 526 - 574
Target Start/End: Complemental strand, 20274544 - 20274496
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||    
T  20274544 ttataattattaagcttgtattaacaattaggagaaatttttggaacaa 20274496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 622
Target Start/End: Complemental strand, 49004955 - 49004907
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  49004955 attatgatgatgtggacgtctttagaggaaaggattttggaataggcta 49004907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 1531688 - 1531634
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||||| |||||||||||||||  ||| |||||| ||||||||||    
T  1531688 ggggtcaaaattgcaacttttgcaaacttagggagtaaaaagtgagtttaagcct 1531634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 538
Target Start/End: Original strand, 1532578 - 1532644
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagccttataattattaa 538  Q
    |||| ||||||||||| || |||||||||||| |||| |||||| ||||||||||| ||| ||||||    
T  1532578 ggggccaaaattgcaacttctgcaaacttagggggtaaaaagtgggtttaagccttttaaatattaa 1532644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 16273783 - 16273729
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||||| ||||||||||||| | |||| |||||| ||||||||||    
T  16273783 ggggtcaaaattgcaacttttgcaaacttatggggtaaaaagtgagtttaagcct 16273729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 16276969 - 16277023
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  16276969 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 16277023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 42829936 - 42829984
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    ||||||| |||||||||||||||| ||||||| ||||| ||||||||||    
T  42829936 attatgaagatgtggacatctttagaggagagaattttagaataggcta 42829984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 15835649 - 15835688
Alignment:
Q  529 taattattaagtttgtattaaaaattagaagaaatttttg 568  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  15835649 taattattaagtatgtattaaaaattaggagaaatttttg 15835688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 22778642 - 22778696
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| ||||||  |||||||||    
T  22778642 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtggatttaagcct 22778696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 24037956 - 24037902
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||||||||| ||||||||||||| | | || |||||| ||||||||||    
T  24037956 ggggtcaaaattgcaacttttgcaaacttaagggataaaaagtgagtttaagcct 24037902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 29183460 - 29183512
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagc 524  Q
    |||| ||||||||||| |||| |||||||||  |||| |||||||||||||||    
T  29183460 ggggccaaaattgcaactttttcaaacttagagggtaaaaagtgtgtttaagc 29183512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 528 - 572
Target Start/End: Complemental strand, 49005013 - 49004970
Alignment:
Q  528 ataattattaagtttgtattaaaaattagaagaaatttttggaac 572  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||    
T  49005013 ataattattaagcttgtattaaaa-ttaggagaaatttttggaac 49004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 22510415 - 22510306
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||| ||||||||||| ||||||||||||||    
T  22510415 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgcggacatctttagaggagaggattttg 22510316  T
Q  613 gaataggcta 622  Q
    ||||||||||    
T  22510315 gaataggcta 22510306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 18903142 - 18903251
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  18903142 ttataattattaaacttgtattaaaaattagaagaagtttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggattttg 18903241  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  18903242 aaataggcta 18903251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 19420113 - 19420222
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||||||             |||| ||||||||||||||||||| ||||||||||||||    
T  19420113 ttataattattaagcttgtattaataattaggagaaatttttggaacaaatgccaagtaagattaggatgatgtggacatctttagaggagaggattttg 19420212  T
Q  613 gaataggcta 622  Q
    ||||| ||||    
T  19420213 gaataagcta 19420222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 20583070 - 20583013
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagccttat 529  Q
    |||||||||||||||| |||| |||||||||| | || ||||||||||||||||||||    
T  20583070 ggggtcaaaattgcaacttttccaaacttaggggataaaaagtgtgtttaagccttat 20583013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 527
Target Start/End: Complemental strand, 15976662 - 15976610
Alignment:
Q  475 gtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    ||||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  15976662 gtcaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 15976610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 15981023 - 15981078
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| |||||||||||    
T  15981023 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcctt 15981078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 19420729 - 19420620
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||| ||||||||| ||| |||||||||||| |||||||||||||||||             ||||||||||  ||||||||||| ||||||||||||||    
T  19420729 ttattattattaagcttgcattaaaaattaggagaaatttttggaacaaatgtcaagtaggattatgatgattaggacatctttagaggagaggattttg 19420630  T
Q  613 gaataggcta 622  Q
    ||||| ||||    
T  19420629 gaataagcta 19420620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 468 - 528
Target Start/End: Original strand, 14456192 - 14456252
Alignment:
Q  468 aataggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctta 528  Q
    |||||||| |||||||| || |||||||||||| || |||| |||||| ||||||||||||    
T  14456192 aataggggccaaaattgtaacttttgcaaactttgggggtaaaaagtgcgtttaagcctta 14456252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 20583979 - 20584032
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    |||||||||||||||| ||||||||||||||  |||| |||||  |||||||||    
T  20583979 ggggtcaaaattgcaacttttgcaaacttagagggtaaaaagtacgtttaagcc 20584032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 526 - 622
Target Start/End: Complemental strand, 40263558 - 40263449
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaacaa-------------ttatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||             ||||||||||||||||||||||| ||||||||||||||    
T  40263558 ttataattattaagcttgtattaaaaattaggagaaatttttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttg 40263459  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  40263458 aaataggcta 40263449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 3627666 - 3627607
Alignment:
Q  474 ggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagccttataatt 533  Q
    |||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||    
T  3627666 ggtcaaaattgcaacttttgcaaacttaaggggtaaaaagtgtgtttaagccttataatt 3627607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 526 - 618
Target Start/End: Original strand, 4651458 - 4651563
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||             |||||||||||||||||||||||| ||||||||||||||    
T  4651458 ttataattattaagcttgtattaaaaattaggagaaatctttggaacaaatgccaagtaggattatgatgatgtggacatctttagaggagaggattttg 4651557  T
Q  613 gaatag 618  Q
     |||||    
T  4651558 aaatag 4651563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 42701003 - 42700948
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcctt 527  Q
    ||||||||||||||||  |||||||||||||| |||| ||||| ||||||||||||    
T  42701003 ggggtcaaaattgcaacctttgcaaacttagggggtaaaaagtttgtttaagcctt 42700948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 27848389 - 27848335
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  27848389 ggggccaaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 27848335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 3554993 - 3555102
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||||||||| |||||| |||| |||||||||||             |||| ||||||||||||||||||| ||||||||||||||    
T  3554993 ttataattattaagcttgtattaacaattaggagaattttttggaacaaatgccaagtaggattaggatgatgtggacatctttagaggagaggattttg 3555092  T
Q  613 gaataggcta 622  Q
     |||| ||||    
T  3555093 aaataagcta 3555102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 622
Target Start/End: Complemental strand, 6904426 - 6904318
Alignment:
Q  527 tataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttgg 613  Q
    ||||||||||||| |||||||||||||||| || |||||||| ||||             ||||||| |||||||||||||||| ||||||| ||||| |    
T  6904426 tataattattaagcttgtattaaaaattaggaggaatttttgaaacaaatgccaagtaggattatgaagatgtggacatctttagaggagagaattttag 6904327  T
Q  614 aataggcta 622  Q
    |||||||||    
T  6904326 aataggcta 6904318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 27849394 - 27849442
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| |||| ||||||||||||||| |||||| ||||||||||    
T  27849394 aaaattgcaacttttacaaacttaggaggtaaaaagtgagtttaagcct 27849442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 527 - 574
Target Start/End: Original strand, 4720878 - 4720925
Alignment:
Q  527 tataattattaagtttgtattaaaaattagaagaaatttttggaacaa 574  Q
    ||||||||||||| |||||||||||||||| || |||||||| |||||    
T  4720878 tataattattaagcttgtattaaaaattaggaggaatttttgaaacaa 4720925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 573
Target Start/End: Original strand, 39122520 - 39122563
Alignment:
Q  530 aattattaagtttgtattaaaaattagaagaaatttttggaaca 573  Q
    |||||||||| |||||||||||||||| ||||||||| ||||||    
T  39122520 aattattaagcttgtattaaaaattaggagaaattttgggaaca 39122563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 4720938 - 4720986
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    ||||| |||||||||||||||||| ||||||| ||||| ||||| ||||    
T  4720938 attataatgatgtggacatctttagaggagagaattttagaataagcta 4720986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 473 - 525
Target Start/End: Complemental strand, 33075238 - 33075186
Alignment:
Q  473 gggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcc 525  Q
    ||||||||||| ||| |||| ||||||||||||||| |||||  |||||||||    
T  33075238 gggtcaaaattacaacttttacaaacttaggaggtaaaaagtaagtttaagcc 33075186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 526 - 622
Target Start/End: Original strand, 198918 - 199027
Alignment:
Q  526 ttataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttg 612  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||             |||||||||||||||||||||||| |||||||||||||     
T  198918 ttataattattaagcttgtattaaaaattagaagaattttttggaacaaatgccaattaggattatgatgatgtggacatctttagaggagaggattttt 199017  T
Q  613 gaataggcta 622  Q
     |||||||||    
T  199018 aaataggcta 199027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 574 - 622
Target Start/End: Complemental strand, 10724 - 10676
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||    
T  10724 attatgctgatgtggacatctttaaaggagaggattttgaaataggcta 10676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 1342 - 1390
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||||||||    
T  1342 attatgatgatgtagacatctttagaggagaggattttagaataggcta 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 8732 - 8780
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||| ||||    
T  8732 attatgatgatgtagacatctttagaggagaggattttagaataagcta 8780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 25227 - 25275
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||| ||||    
T  25227 attatgatgatgtagacatctttagaggagaggattttagaataagcta 25275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 527 - 622
Target Start/End: Original strand, 9932 - 10040
Alignment:
Q  527 tataattattaagtttgtattaaaaattagaagaaatttttggaaca-------------attatgatgatgtggacatctttaaaggagaggattttgg 613  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||             ||||||| |||||||||||||||| ||||||| ||||| |    
T  9932 tataattattaagcttgtattaaaaattaggaggaatttttggaacaaatgccaagtaggattatgaagatgtggacatctttagaggagagaattttag 10031  T
Q  614 aataggcta 622  Q
    |||||||||    
T  10032 aataggcta 10040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 622
Target Start/End: Complemental strand, 327 - 279
Alignment:
Q  574 attatgatgatgtggacatctttaaaggagaggattttggaataggcta 622  Q
    ||||||||||||| |||||||||| ||||||||||||| ||||| ||||    
T  327 attatgatgatgtagacatctttagaggagaggattttagaataagcta 279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 11608 - 11560
Alignment:
Q  478 aaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||||||||| ||||||||||||||| |||| |||||| ||||||||||    
T  11608 aaaattgcaacttttgcaaacttagggggtaaaaagtgagtttaagcct 11560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 12369 - 12408
Alignment:
Q  529 taattattaagtttgtattaaaaattagaagaaatttttg 568  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  12369 taattattaagtatgtattaaaaattaggagaaatttttg 12408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 268464 - 268410
Alignment:
Q  472 ggggtcaaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    |||| ||||||||||| ||||||||||||| |||||| |||||| |||| |||||    
T  268464 ggggccaaaattgcaacttttgcaaacttaagaggtaaaaagtgcgttttagcct 268410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 526
Target Start/End: Complemental strand, 2183 - 2134
Alignment:
Q  477 caaaattgcaatttttgcaaacttaggaggtagaaagtgtgtttaagcct 526  Q
    ||||||||||| ||||||||||||||| |||| |||||| |||| |||||    
T  2183 caaaattgcaacttttgcaaacttagggggtaaaaagtgcgttttagcct 2134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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