View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_high_24 (Length: 292)
Name: NF11982_high_24
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 50157260 - 50157005
Alignment:
| Q |
16 |
agaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaaccgagacagtgccttggagatcataattgcttgatttcgatta |
115 |
Q |
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| T |
50157260 |
agaccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaactgagacagtgccttggagattataattgcttgatttcgatta |
50157161 |
T |
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| Q |
116 |
aataattgaactcagttacagtaaaagtgacgagttttcaagttatgtatagaagacttttggataacaatgtaccagtgaatatgctgctcggcnnnnn |
215 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50157160 |
aataattgaactcagttacagtaaaagtgacgagtgttcaagttatgtatagaatacttttggataacaatgtaccagtgaatatgctgctcggcaaaaa |
50157061 |
T |
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| Q |
216 |
nncttgtccaacatcaacttttagagtgcattcaaaccattccgaaattctaacga |
271 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50157060 |
aacttgtccaacctcaacttttagagtgcattcaaaccattccgaaattctaacga |
50157005 |
T |
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