View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982_high_26 (Length: 250)
Name: NF11982_high_26
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 32193883 - 32193637
Alignment:
| Q |
1 |
acagtggcactcggtggaggccactgtagtcatggtggtctccaaaatctatgtggggaaagacattcgaccttgggctcttcataatagcaagaaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32193883 |
acagtggcactcggtggaggccactgtagtcatggtggtctccaaaatctatgtggggaaagacattcgaccttgggctcttcataatagcaagaaactt |
32193784 |
T |
|
| Q |
101 |
gcgacgaagattgaatcaatgtttggaaattggttttacatttcaaagttaaaataattacttaa-tttgttgtcttttcattttagcatttcaattttg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
32193783 |
gcgacgaagattgaatcaatgtttggaaattggttttacatttcaaagttaaaataattacttaattttggtgtcttttcattttagcatttcaattttg |
32193684 |
T |
|
| Q |
200 |
tttccttcatttctgcctctaatcccaacttgattatctctctgctc |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32193683 |
tttccttcatttctgcctctaatcccaacttgattatctctctgctc |
32193637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32197563 - 32197478
Alignment:
| Q |
1 |
acagtggcactcggtggaggccactgtagtcatggtggtctccaaaatctatgtggggaaagacattcgaccttgggctcttcata |
86 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32197563 |
acagtggcactcgatggaggccactatagtcatggtggtctctaaaatatatgtggggaaggacattcgaccttgggctcttcata |
32197478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 41177163 - 41177351
Alignment:
| Q |
6 |
ggcactcggtggaggccactgtagtcatggtggtctccaaaatctatgtggggaaagacattcgaccttgggctcttcataatagcaagaaacttgcgac |
105 |
Q |
| |
|
|||||||| |||||| |||||||||| |||||||||||||| ||| | ||||||| || ||||| |||| |||||||||||||| ||||||| |||||| |
|
|
| T |
41177163 |
ggcactcgatggaggtcactgtagtcgtggtggtctccaaagtctctatggggaaggatattcggtcttgagctcttcataatagtaagaaacctgcgac |
41177262 |
T |
|
| Q |
106 |
gaagattgaatcaatgtttggaaattggttttacatttcaaagttaaaataattacttaatttgttgtctttt-cattttagcatttcaa |
194 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| || | ||||||| |||| ||||||||||||||| |
|
|
| T |
41177263 |
gaggattgaatcagtgtttggaaattggttttacatttcaaagttaaaaaaatta-ttgagttgttgttttttaaattttagcatttcaa |
41177351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University