View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982_high_4 (Length: 606)

Name: NF11982_high_4
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982_high_4
NF11982_high_4
[»] chr1 (12 HSPs)
chr1 (55-307)||(49250248-49250488)
chr1 (145-328)||(269995-270175)
chr1 (355-549)||(269811-269994)
chr1 (171-287)||(14945436-14945549)
chr1 (462-585)||(28361343-28361465)
chr1 (221-307)||(49250029-49250114)
chr1 (171-287)||(14940194-14940307)
chr1 (171-287)||(14950201-14950314)
chr1 (171-287)||(14954442-14954555)
chr1 (180-307)||(14941553-14941679)
chr1 (180-307)||(14951560-14951686)
chr1 (180-307)||(14955801-14955927)
[»] chr8 (1 HSPs)
chr8 (178-264)||(8791002-8791088)
[»] chr7 (1 HSPs)
chr7 (198-261)||(6205758-6205819)
[»] chr2 (1 HSPs)
chr2 (345-424)||(32725757-32725835)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 55 - 307
Target Start/End: Original strand, 49250248 - 49250488
Alignment:
Q  55 ttagagaatggttttactgatatttgtaattatgtgccagtttcattgatattttgattactttattgatactctattttgttgatcaagagaaagaaag 154  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||           ||||||||||| ||||||||||    
T  49250248 ttagagaaaggttttactgatatttgtaattatgtgctagtttcattgatattttgattactttatt-----------ttgttgatcaaaagaaagaaag 49250336  T
Q  155 aaaagtgaaatcaa-ggaatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcata 253  Q
    ||| |||||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||| ||||||||||| ||||||||||||||||| |||    
T  49250337 aaatgtgaaatcaaaggaatttgataacaaagtaacttcatttcatc-atactcttcaatttgaattttttacatgtggtcaactttacaaccacttata 49250435  T
Q  254 caactaaagtaaaaataaatccttaaacctataaatgatgaattccttatacaa 307  Q
    |||| ||||| | ||||||||||||||| ||||||||| |||| |||| |||||    
T  49250436 caacgaaagt-acaataaatccttaaacttataaatgacgaatcccttgtacaa 49250488  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 145 - 328
Target Start/End: Complemental strand, 270175 - 269995
Alignment:
Q  145 agaaagaaagaaaagtgaaatcaaggaatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaa 244  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  270175 agaaagaaagaaacgtgaaatcaaggaatttgataacaaggtaacttcatttcactaatactcctcaatttgaatattttacatgtgttcaactttacaa 270076  T
Q  245 ccactcatacaactaaagtaaaaataaatccttaaacctataaatgatgaattccttatacaaaactctctaggcgtgccacct 328  Q
    |  ||||||||| |||| | |||| |||| |||||||||||  ||||||||| |||||||||||||||| ||||| ||||||||    
T  270075 cggctcatacaattaaa-ttaaaacaaattcttaaacctat--atgatgaatcccttatacaaaactctttaggcatgccacct 269995  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 355 - 549
Target Start/End: Complemental strand, 269994 - 269811
Alignment:
Q  355 ttttttacatatcaaatacacattctgcagcttcaaattttagagtttcccttcacttcacattttaaaggttc-cttcccttgcaa-gacaatgtaaaa 452  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||          |||||||| ||  |||||||| ||||||||  ||    
T  269994 ttttttacatat-aaatacacattctgcaacttcaaattttagagtttcccttcac----------aaaggttcgctagccttgcaaagacaatgtcgaa 269906  T
Q  453 tgactcttgaaattgacataatcatcatttgcaagacaatttttgaataattcctgaaattgacatattcattctcacatcagaaattgaaagagtt 549  Q
    ||||| |  | |||| |||||||||| ||||||| |||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  269905 tgactatatatattggcataatcatcctttgcaaaacaacttttgaataactcctgaaattgac--attcattctcacatcagaaattgaaagagtt 269811  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 14945436 - 14945549
Alignment:
Q  171 aatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaata 270  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||||||||||||||| | ||| ||| ||||||||||  ||||||||||||| | ||||    
T  14945436 aatttgaatacaaagtaacttcatttcatcgatactcttcaatttgaatattttacacg-gtt-aaccttacaaccacctatacaactaaagt-acaata 14945532  T
Q  271 aatccttaaacctataa 287  Q
    |||||||||| ||||||    
T  14945533 aatccttaaatctataa 14945549  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 462 - 585
Target Start/End: Complemental strand, 28361465 - 28361343
Alignment:
Q  462 aaattgacataatcatcatttgcaagacaatttttgaataattcctgaaattgacatattcattctcacatcagaaattgaaagagttaagctaatattc 561  Q
    ||||||||||| ||||  ||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||  ||||||||| |||| |  |||||||     
T  28361465 aaattgacatattcattctttgcaagacaatgtttgattaattcctaaaatttacatattcattctcacatctaaaattgaaaaagtt-acataatattt 28361367  T
Q  562 ccaactcataattgtctatacata 585  Q
    |||||||| |||| ||||| ||||    
T  28361366 ccaactcagaattatctatgcata 28361343  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 49250114 - 49250029
Alignment:
Q  221 ttttacatgtgttcaactttacaaccactcatacaactaaagtaaaaataaatccttaaacctataaatgatgaattccttatacaa 307  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| | |||||||| |||||||||| |||||||||| ||||| ||||    
T  49250114 ttttacatgtggtcaactttacaaccactaatacaactaaagt-acaataaatcattaaacctattaatgatgaatcccttaaacaa 49250029  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 14940194 - 14940307
Alignment:
Q  171 aatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaata 270  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||| ||||||||||  |||||||||| || | ||||    
T  14940194 aatttgaatacaaagtaacttcatttcatcgatactcttcaatttcaatattttacatg-gtt-aaccttacaaccacctatacaactaacgt-acaata 14940290  T
Q  271 aatccttaaacctataa 287  Q
    |||||||||| ||||||    
T  14940291 aatccttaaatctataa 14940307  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 14950201 - 14950314
Alignment:
Q  171 aatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaata 270  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||| ||||||||||  |||||||||| || | ||||    
T  14950201 aatttgaatacaaagtaacttcatttcatcgatactcttcaatttcaatattttacatg-gtt-aaccttacaaccacctatacaactaacgt-acaata 14950297  T
Q  271 aatccttaaacctataa 287  Q
    |||||||||| ||||||    
T  14950298 aatccttaaatctataa 14950314  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 171 - 287
Target Start/End: Original strand, 14954442 - 14954555
Alignment:
Q  171 aatttgataacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaata 270  Q
    |||||||  |||||||||||||||||||| ||||||| ||||||| ||||||||||||| ||| ||| ||||||||||  |||||||||| || | ||||    
T  14954442 aatttgaatacaaagtaacttcatttcatcgatactcttcaatttcaatattttacatg-gtt-aaccttacaaccacctatacaactaacgt-acaata 14954538  T
Q  271 aatccttaaacctataa 287  Q
    |||||||||| ||||||    
T  14954539 aatccttaaatctataa 14954555  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 14941553 - 14941679
Alignment:
Q  180 acaaagtaacttcattt-cattgata-ctcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaataaatcctt 277  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||||||||||| ||| | ||||||||||||  |||||||||||||| || |||||||||    
T  14941553 acaaagtaacttcattttcatctataactcttcaatttgaatattttacatg-gttga-ctttacaaccacctatacaactaaagtacaa-taaatcctt 14941649  T
Q  278 aaacctataaatgatgaattccttatacaa 307  Q
     || ||||||||||||||| | ||||||||    
T  14941650 gaatctataaatgatgaatccattatacaa 14941679  T

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Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 14951560 - 14951686
Alignment:
Q  180 acaaagtaacttcattt-cattgata-ctcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaataaatcctt 277  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||||||||||| ||| | ||||||||||||  |||||||||||||| || |||||||||    
T  14951560 acaaagtaacttcattttcatctataactcttcaatttgaatattttacatg-gttga-ctttacaaccacctatacaactaaagtacaa-taaatcctt 14951656  T
Q  278 aaacctataaatgatgaattccttatacaa 307  Q
     || ||||||||||||||| | ||||||||    
T  14951657 gaatctataaatgatgaatccattatacaa 14951686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 14955801 - 14955927
Alignment:
Q  180 acaaagtaacttcattt-cattgata-ctcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagtaaaaataaatcctt 277  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||||||||||| ||| | ||||||||||||  |||||||||||||| || |||||||||    
T  14955801 acaaagtaacttcattttcatctataactcttcaatttgaatattttacatg-gttga-ctttacaaccacctatacaactaaagtacaa-taaatcctt 14955897  T
Q  278 aaacctataaatgatgaattccttatacaa 307  Q
     || ||||||||||||||| | ||||||||    
T  14955898 gaatctataaatgatgaatccattatacaa 14955927  T

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Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 8791088 - 8791002
Alignment:
Q  178 taacaaagtaacttcatttcattgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaagta 264  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||  ||| ||||||||||    
T  8791088 taacaaagtaatttcatttgattgatactcctcaatttgaatattttatatgtggtaaactttacaaccaccgataaaactaaagta 8791002  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 6205819 - 6205758
Alignment:
Q  198 attgatactcctcaatttgaatattttacatgtgttcaactttacaaccactcatacaactaaa 261  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||||||||||||  ||||||||||    
T  6205819 attggtactcttcaatttgaatgttttacatgtggtcaactttacaaccact--tacaactaaa 6205758  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 32725835 - 32725757
Alignment:
Q  345 gatccactagttttttacatatcaaatacacattctgcagcttcaaattt-tagagtttcccttcacttcacattttaaag 424  Q
    |||||| ||||| ||||||||| |  |||||| ||||||||||| | ||| ||  ||||||||||||||||||||||||||    
T  32725835 gatccaatagttctttacatatga--tacacactctgcagcttccattttgtaaggtttcccttcacttcacattttaaag 32725757  T

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