View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_high_5 (Length: 506)
Name: NF11982_high_5
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Complemental strand, 886009 - 885531
Alignment:
| Q |
14 |
agagaataaatgagaagcaagttggtgtgatttttggagggaatcacaaccaccccattggttcttgatggccatttgaagggcataccaacgtgagaga |
113 |
Q |
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| T |
886009 |
agagaataaatgagaagcaagttggtgtgatttttggagggaatcacaaccaccccattggttcttaatggccatttgaagggcataccaacgtgagaga |
885910 |
T |
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| Q |
114 |
agcaaaatgatactctcttgtaacctaatcctagagagtgtttctgtttctctattgatggtatccatcatgagaagaacc---tttgtctctttgtgtg |
210 |
Q |
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| T |
885909 |
agcaaaatgatactctcttgtaacctaatcctagagagtgtttctgtttctctattgatggtatccatcatgagaagaaccctttttctctctatgtgtg |
885810 |
T |
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| Q |
211 |
ttgtccaaacatcacacaaagagtgggagagaaatgagaggaagtgtatatttgtatatatacataatgtgtggagtatatgagaattgatgtgcgaaat |
310 |
Q |
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| T |
885809 |
ttgtccaaacatcacacaaagagtgggagagaaatgagaggaagtgtatatt-gtatatatacataatgtgtggagtatatgagaattgatgtgcgaaat |
885711 |
T |
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| Q |
311 |
gtttggaattatatgacatgaatgagttggagagggagagtttgtaggaatgcattaattgcttctaccttttgttaactagtatttctattactatatg |
410 |
Q |
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| T |
885710 |
gtttggaattatatgacatgaatgagttggagagggagagtttgtaggaatgcattaattgcttctaccttttgttaactagtatttctattactatatg |
885611 |
T |
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| Q |
411 |
tggaatatatggattatgcatttcaaggcctaataaaaggggaaaatctagttcatcttacattttgttaatgtacataa |
490 |
Q |
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| T |
885610 |
tggaatatatggattatgcatttcaaggcctaataaaaggggaaaatctagttcatctttcattttgttaatgtacataa |
885531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 474
Target Start/End: Complemental strand, 1849159 - 1849107
Alignment:
| Q |
423 |
attatgcatttcaaggcctaataaaaggg-gaaaatctagttcatcttacatt |
474 |
Q |
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| T |
1849159 |
attatgcatttcaaggcctaatataagggaaaaaaactagttcatctttcatt |
1849107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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