View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982_high_7 (Length: 498)

Name: NF11982_high_7
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982_high_7
NF11982_high_7
[»] chr7 (1 HSPs)
chr7 (24-482)||(3036378-3036837)
[»] chr4 (1 HSPs)
chr4 (24-482)||(16863125-16863584)
[»] chr5 (1 HSPs)
chr5 (24-473)||(20528758-20529205)
[»] chr8 (1 HSPs)
chr8 (24-482)||(40612799-40613245)
[»] chr3 (2 HSPs)
chr3 (270-477)||(20542082-20542289)
chr3 (24-212)||(20542323-20542511)
[»] chr1 (1 HSPs)
chr1 (368-450)||(23940152-23940233)
[»] chr6 (1 HSPs)
chr6 (372-412)||(29945174-29945214)


Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 24 - 482
Target Start/End: Complemental strand, 3036837 - 3036378
Alignment:
Q  24 aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttc-cccat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  3036837 aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttttcccat 3036738  T
Q  123 aggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaac 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  3036737 aggggacattcattctgatagtgtcccagcttgtgacacttataacactcaatagaatctttgttgattcttcccctaccctttcctctagcacctgaat 3036638  T
Q  223 gccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcg 322  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3036637 gccctcttcctctaccatatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcg 3036538  T
Q  323 ttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtt 422  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3036537 ttcttgaacaagtaagctactctgaagttcatcgatgaagagtgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtt 3036438  T
Q  423 aaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtc 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3036437 aaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtc 3036378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 24 - 482
Target Start/End: Complemental strand, 16863584 - 16863125
Alignment:
Q  24 aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata 123  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | | |||| | |||||||| | ||||||    
T  16863584 aaccatacctcatctttggcatttgtgttcaaacatgattgagccatcagaagcaattcaccatcttcaaactcaacatagtgtgcattttcttcccata 16863485  T
Q  124 ggggacattcattctgatagtgtcccagctcgtgacactta-taacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaac 222  Q
    | ||||||||||| |||||||||||||||| |||||||||  || || |||| |    |  |||| |||||||| |||||| |||||||| |||||||||    
T  16863484 gaggacattcattttgatagtgtcccagcttgtgacactttgtagcattcaacacttccattgttaattcttcctctaccccttcctctaacacctgaac 16863385  T
Q  223 gccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcg 322  Q
    ||||||||||||||||| |||| | |||||||||||| ||||| ||  ||||||||||||| |||||||||||||||||||| |||| ||| |||||| |    
T  16863384 gccctcttcctctaccatatcctacagatcctcttccaccattagatgccttcaaagcttgttcaatatcaatttcttgattttgagttttcatgcgttg 16863285  T
Q  323 ttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtt 422  Q
    ||||||||||||||| || || ||||||||||  ||  ||| || ||| |||||||| ||||| | ||| ||||||| ||| ||||| || |||||||||    
T  16863284 ttcttgaacaagtaaactgctatgaagttcattaattgagagtgtagttacatcatttgattcatgaattgagcacagcacgtaattaaatttacttgtt 16863185  T
Q  423 aaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtc 482  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||    
T  16863184 aaagatctcagaatcttttcaacaacaagtgtttgatccatcttctcaccatgtgttgtc 16863125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 24 - 473
Target Start/End: Complemental strand, 20529205 - 20528758
Alignment:
Q  24 aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata 123  Q
    |||||||||||||||||| ||||||||||||  |||| ||||||||| ||| | ||||||||||||||||||| ||||||||||| ||||  | ||||||    
T  20529205 aaccatacctcatctttgacatttgtgttcaatcatgtttgagccatgagatgaaattcaccatcttcaaattcagcataatttgaatttggttcccata 20529106  T
Q  124 ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaacg 223  Q
    |  |||||||||||||||||||||| |||| |||||||||||  || ||||   ||||| |||| |||||||| | ||   |||||||    | ||||||    
T  20529105 gatgacattcattctgatagtgtcctagcttgtgacacttattgcattcaactaaatct-tgttaattcttcctccacatcttcctctttg-cttgaacg 20529008  T
Q  224 ccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgt 323  Q
    |||||||||||| ||| |||||| |||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||| |||||| ||    
T  20529007 ccctcttcctctcccatatcccacagatcctcttccaccattagaaaccttcaaagcttgctcagtatcagtttcttggttttgagatttcatgcgttgt 20528908  T
Q  324 tcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtta 423  Q
    |||||||||||||| ||||| || | |||||  ||| | | ||  ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  20528907 tcttgaacaagtaaactactatgtaattcattaatggaaagtgttgtcacatcattggattcttcaatagatcacaccacataattgaacttgcttgtta 20528808  T
Q  424 aagatctcagaatcttctcaacaaccagtgtttgatccatcttttcacca 473  Q
    |||||||||  ||||| ||||||| ||| |||||||||||||||||||||    
T  20528807 aagatctcaagatcttttcaacaagcagagtttgatccatcttttcacca 20528758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 24 - 482
Target Start/End: Original strand, 40612799 - 40613245
Alignment:
Q  24 aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata 123  Q
    |||||||||||||||||||| |||||||||| ||| ||||| ||||| ||||| ||||||||||||||||| | |||| | || ||||||| | ||||||    
T  40612799 aaccatacctcatctttggcgtttgtgttcaagcaagattgggccataagaagtaattcaccatcttcaaacttagcaaagttagcattttcttcccata 40612898  T
Q  124 ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaacg 223  Q
    | ||||| |||||||| |||||||||| || | |||||||| ||||||||| |    || |||||||||            |||||||||||||||||||    
T  40612899 gaggacactcattctggtagtgtcccaacttgcgacacttaaaacactcaacacttgctttgttgattc------------ttcctctagcacctgaacg 40612986  T
Q  224 ccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgt 323  Q
     ||||||||||||||| | ||||   | |||||| | ||||| ||||||||||||||||| |||| |||||| |||||||| |||||||| ||| || ||    
T  40612987 tcctcttcctctaccataccccacgaaacctctttcaccattggaaaccttcaaagcttgttcaacatcaatgtcttgattttgagatttcatgtgttgt 40613086  T
Q  324 tcttgaacaagtaagctactctgaagttcatcgatgaagaatgcagtcacatcattagattcttcaatagagcacaccacataattgaacttacttgtta 423  Q
    |||||||||||||| |||||||| |  ||||| ||  | | || ||| || || || ||||||||||| || ||||||||||||||||| ||||||||||    
T  40613087 tcttgaacaagtaaactactctgcaactcatcaattgatagtgtagtgacgtcgtttgattcttcaatggaacacaccacataattgaatttacttgtta 40613186  T
Q  424 aagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtc 482  Q
    ||||||||| |||||| ||||||||||| |||||||||||||| |||||||||| ||||    
T  40613187 aagatctcaaaatcttttcaacaaccagcgtttgatccatcttctcaccatgtgttgtc 40613245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 270 - 477
Target Start/End: Complemental strand, 20542289 - 20542082
Alignment:
Q  270 accttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactctgaagttcatcgatgaagaatgcag 369  Q
    |||||||||||||| |||| |||||  ||||||||||||||||| |||||| |||||||||||||||| |||||||| |  ||||| ||  | |  | ||    
T  20542289 accttcaaagcttgttcaacatcaaagtcttgattctgagatttcatgcgttgttcttgaacaagtaaactactctgcaactcatcaattgatagcgtag 20542190  T
Q  370 tcacatcattagattcttcaatagagcacaccacataattgaacttacttgttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttc 469  Q
    | || ||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||    
T  20542189 tgacgtcatttgattcttcaatggaacacaccacataattgaatttacttgttaaagatctcagaatcttttcaacaaccagcgtttgatccatcttctc 20542090  T
Q  470 accatgtg 477  Q
    ||||||||    
T  20542089 accatgtg 20542082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 20542511 - 20542323
Alignment:
Q  24 aaccatacctcatctttggcatttgtgttcatgcatgattgagccatcagaagcaattcaccatcttcaaattgagcataatttgcattttttccccata 123  Q
    |||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| ||||||||||||||||| | |||| | || ||||||| | ||||||    
T  20542511 aaccatacctcatctttggcgtttgtgttcaagcaagattgagccataagaagtaattcaccatcttcaaactcagcaaagttagcattttcttcccata 20542412  T
Q  124 ggggacattcattctgatagtgtcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctcta 212  Q
    | ||||| |||||||||||||||||||||| |||||||||  ||||||||| |    || ||||||||||||| || ||| ||||||||    
T  20542411 gaggacactcattctgatagtgtcccagcttgtgacacttgaaacactcaacacttgctttgttgattcttcctctgccccttcctcta 20542323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 368 - 450
Target Start/End: Original strand, 23940152 - 23940233
Alignment:
Q  368 agtcacatcattagattcttcaatagagcacaccacataattgaacttacttgttaaagatctcagaatcttctcaacaacca 450  Q
    |||||||||||| ||||||||||| || ||||||||| |||||||||| |||| ||| ||||| | |||||||||||| ||||    
T  23940152 agtcacatcatttgattcttcaatggaacacaccacacaattgaacttgcttg-taatgatcttaaaatcttctcaaccacca 23940233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 29945174 - 29945214
Alignment:
Q  372 acatcattagattcttcaatagagcacaccacataattgaa 412  Q
    |||||||| ||||||||||| |||||||| |||||||||||    
T  29945174 acatcatttgattcttcaattgagcacacaacataattgaa 29945214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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