View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_10 (Length: 471)
Name: NF11982_low_10
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 10274951 - 10275394
Alignment:
| Q |
19 |
atcttcttacaaataagatcaatgtcaacaataccctctcagaccctaaagacgtaaacatgtcaccccaaaggtaaagctactaagaccttactttata |
118 |
Q |
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| T |
10274951 |
atcttcttacaaataagatcaatgtcaacaataccctcccagaccttaaagacgtaaaaatgtcaccccaaagataaagctactaagacctcactttagg |
10275050 |
T |
|
| Q |
119 |
cccaccaactaaaatttannnnnnnattaaattttataaacaaaaatgactcatttgcag-acaaaaattgctacatatattaaaacttgttttaagtcc |
217 |
Q |
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| T |
10275051 |
cccaccaactaaaatttatttttctattaaattttataaacaaaaatgactcatatgcagaaaaaaaattgtcacatatattaaaacttgttttaagccc |
10275150 |
T |
|
| Q |
218 |
caatattaaactttattgacccaactgtaagacaaaattgcaa-tttttgctgttctccctacacttgcaaagcaaagcgagacaaataccatcaatttg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10275151 |
caatattaaactttattgacccaactgtaagacaaaattgcaactttttgctgttctccctacacttgcaaagaaaagcgagacaaataccatcaattta |
10275250 |
T |
|
| Q |
317 |
taaagagnnnnnnnnnnctannnnnnnatgaagggatttatttgtcgattcaaaaaattattatatctatctctttcttatttctcttctatttttctag |
416 |
Q |
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| T |
10275251 |
taaagagaaaaaaaaaactatttttttatgaagggacttatttgtcgattcaaaaaattattatatttatctctttcttatttctcttctatttttctag |
10275350 |
T |
|
| Q |
417 |
taccaaacaatcaaatcaattacattttttatttctttctctct |
460 |
Q |
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| T |
10275351 |
taccaaacaatcaaatcagttacattttttatttctttctctct |
10275394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 39104125 - 39104050
Alignment:
| Q |
144 |
attaaattttataaacaaaaatgactcatttgcagacaaaaattgctacatatattaaaacttgttttaagtccca |
219 |
Q |
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| T |
39104125 |
attatattttataaacaaaaatgcctcatatacagacaaaaaagaccacatatattaaaactttctttaagcccca |
39104050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 17944521 - 17944481
Alignment:
| Q |
145 |
ttaaattttataaacaaaaatgactcatttgcagacaaaaa |
185 |
Q |
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| T |
17944521 |
ttaaattttataaacaaaaatgtctcatattcagacaaaaa |
17944481 |
T |
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