View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982_low_11 (Length: 448)

Name: NF11982_low_11
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982_low_11
NF11982_low_11
[»] chr3 (5 HSPs)
chr3 (15-448)||(46588954-46589386)
chr3 (140-179)||(21897008-21897047)
chr3 (140-176)||(51953874-51953910)
chr3 (140-179)||(35842787-35842826)
chr3 (138-177)||(50659845-50659884)
[»] chr7 (4 HSPs)
chr7 (139-179)||(6590039-6590079)
chr7 (140-179)||(7206725-7206764)
chr7 (140-179)||(22558065-22558104)
chr7 (140-177)||(18923343-18923380)
[»] chr6 (1 HSPs)
chr6 (140-179)||(20528394-20528433)
[»] chr5 (1 HSPs)
chr5 (140-179)||(35511696-35511735)
[»] chr4 (6 HSPs)
chr4 (140-179)||(4254038-4254077)
chr4 (140-179)||(37390304-37390343)
chr4 (140-179)||(29505513-29505552)
chr4 (140-179)||(55531544-55531583)
chr4 (141-179)||(1196263-1196301)
chr4 (139-171)||(37726666-37726698)
[»] chr1 (4 HSPs)
chr1 (137-179)||(2282462-2282504)
chr1 (139-179)||(47369929-47369969)
chr1 (141-179)||(23350251-23350289)
chr1 (141-179)||(27622640-27622678)
[»] scaffold0191 (1 HSPs)
scaffold0191 (140-179)||(32245-32284)
[»] scaffold0064 (1 HSPs)
scaffold0064 (140-179)||(1939-1978)
[»] chr8 (2 HSPs)
chr8 (140-179)||(23052054-23052093)
chr8 (140-179)||(35451487-35451526)
[»] scaffold0014 (1 HSPs)
scaffold0014 (138-179)||(135379-135419)
[»] chr2 (1 HSPs)
chr2 (141-178)||(26188856-26188893)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 46589386 - 46588954
Alignment:
Q  15 caaaggacgaccgatgatagctctttggtggggtagtgtttatgaaagccctaaaatgctcaagtcaccgagagatgaggtaagtgcgaggtagtataca 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46589386 caaaggacgaccgatgatagctctttggtggggtagtgtttatgaaagccctaaaatgctcaagtcaccgagagatgaggtaagtgtgaggtagtataca 46589287  T
Q  115 aatatgtgtatcttgcttccaagtgaactagtcgagatacccgtgctacagcacgggtagcgcggggatcccactttaaacggaaaagtgtatgttgaca 214  Q
    ||||||| ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46589286 aatatgtatatcttgcttccaagagaactagtcaagatacacgtgctacagcacgggtagcgcggggatcccactttaaacagaaaagtgtatgttgaca 46589187  T
Q  215 ctataaatgagagaatctaacgctttaagatttaattttgagttaaaacgtggtgttcaattctctttgtatgattgctatctgatctaatgtgataatc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46589186 ctataaatgagagaatctaacgctttaagatttaattttgagttaaaatgtggtgttcaattctctttgtatgattgctat-tgatctaatgtgataatc 46589088  T
Q  315 ctccaaacttctctcgtgacccaacactctttaggagaattagaaggaaattcatcaaaagcatcgtgagatactcattgtgatcaatagatcaacgttt 414  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46589087 ctccaaacttctctcctaacccaacactctttaggagaattagaaggaaattcatcaaaagcatcgtgagatactcattgtgatcaatagatcaacgttt 46588988  T
Q  415 gacgtgtttgcttcataacctttggcacatgggt 448  Q
    ||||||||||||||||||||||||||||||||||    
T  46588987 gacgtgtttgcttcataacctttggcacatgggt 46588954  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 21897008 - 21897047
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21897008 aactagtcgagatacccgtgctacagcacgggtagcgcgg 21897047  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 51953910 - 51953874
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcg 176  Q
    ||||||||||||||||||||||||||||||| |||||    
T  51953910 aactagtcgagatacccgtgctacagcacggatagcg 51953874  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 35842787 - 35842826
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  35842787 aactagtcgagatacccgtgctatatcacgggtagcgcgg 35842826  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 50659884 - 50659845
Alignment:
Q  138 tgaactagtcgagatacccgtgctacagcacgggtagcgc 177  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  50659884 tgaactagtcgagatacccgtgctgtagcacgggtagcgc 50659845  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 6590079 - 6590039
Alignment:
Q  139 gaactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6590079 gaactagtcgagatacccgtgctacagcacgggtagcgcgg 6590039  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 7206725 - 7206764
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7206725 aactagtcgagatacccgtgctacagcacgggtagcgcgg 7206764  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 22558104 - 22558065
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22558104 aactagtcgagatacccgtgctacagcacgggtagcgcgg 22558065  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 18923380 - 18923343
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgc 177  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18923380 aactagtcgagatacccgtgctacagtacgggtagcgc 18923343  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 20528394 - 20528433
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20528394 aactagtcgagatacccgtgctacagcacgggtagcgcgg 20528433  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 35511696 - 35511735
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35511696 aactagtcgagatacccgtgctacagcacgggtagcgcgg 35511735  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 4254038 - 4254077
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4254038 aactagtcgagatacccgtgctacagcacgggtagcgcgg 4254077  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 37390343 - 37390304
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  37390343 aactagtcgagacacccgtgctacagcacgggtagcgcgg 37390304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 29505513 - 29505552
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  29505513 aactagtcgagatacccgcgctacaacacgggtagcgcgg 29505552  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 55531583 - 55531544
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  55531583 aactaggcgagatacccgtgctacagcgcgggtagcgcgg 55531544  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 1196301 - 1196263
Alignment:
Q  141 actagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  1196301 actagtcgagacactcgtgctacagcacgggtagcgcgg 1196263  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 37726698 - 37726666
Alignment:
Q  139 gaactagtcgagatacccgtgctacagcacggg 171  Q
    |||||||||||||||||||||||||| ||||||    
T  37726698 gaactagtcgagatacccgtgctacaacacggg 37726666  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 2282504 - 2282462
Alignment:
Q  137 gtgaactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  2282504 gtgaactagtcgagatacccatgctacagcacgggtagcgcgg 2282462  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 47369969 - 47369929
Alignment:
Q  139 gaactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  47369969 gaactagtcgagatacccgtgctacagtacgagtagcgcgg 47369929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 23350289 - 23350251
Alignment:
Q  141 actagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  23350289 actagtcgagatacccatgctacagcatgggtagcgcgg 23350251  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 27622678 - 27622640
Alignment:
Q  141 actagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  27622678 actagtcgagagacccgtgctatagcacgggtagcgcgg 27622640  T

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Target: scaffold0191 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 32245 - 32284
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  32245 aactagtcgagagacccgtgctatagcacgggtagcgcgg 32284  T

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Target: scaffold0064 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 1978 - 1939
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  1978 aactagtcgagagacccgtgctatagcacgggtagcgcgg 1939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 23052093 - 23052054
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  23052093 aactagtcgagagacccgtgctatagcacgggtagcgcgg 23052054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 35451526 - 35451487
Alignment:
Q  140 aactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  35451526 aactagtcaagatacccgtgctatagcacgggtagcgcgg 35451487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 135419 - 135379
Alignment:
Q  138 tgaactagtcgagatacccgtgctacagcacgggtagcgcgg 179  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  135419 tgaactagtcgagatacccgtgct-gagcacgggtagcgcgg 135379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 26188856 - 26188893
Alignment:
Q  141 actagtcgagatacccgtgctacagcacgggtagcgcg 178  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  26188856 actagtcgagatacacgtgctacaacacgggtagcgcg 26188893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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