View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_14 (Length: 408)
Name: NF11982_low_14
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Original strand, 7889794 - 7890172
Alignment:
| Q |
19 |
ataaactgctcctaacttctaggagggtggttatttggattctatagttatgaattgtgtcattctaaattaaattaagcaaggttattaatcactttct |
118 |
Q |
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| T |
7889794 |
ataaactgctcctaacttctaggagggtggttatttggattctatagttatgaattgtgtcattctaaattaaattaagcaaggttattaatcactttct |
7889893 |
T |
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| Q |
119 |
ataagtattcacgttcaagaatttctcagcccatttcaaacccactgcatgcatccttagcaatactgaaagctgctcatttttgacatctgacaggaaa |
218 |
Q |
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| T |
7889894 |
ataagtattcacgttcaagaatttctcagcccatttcaaacccactgcatgcatccttagcaatactgaaagctgctcatttttgacatctgacaggaaa |
7889993 |
T |
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| Q |
219 |
ttctttaactactcttctctaccatctttctcctccccgcgtccatcgcagcttccttcgaaggtacgtaaattcctcctatttttctaattcatgtatt |
318 |
Q |
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| T |
7889994 |
ttctttaactactcttctctaccatctttctcctccccgcgtccatcgcagcttccttcgaaggtacgtaaattcctcctatttttctaattcatgtatt |
7890093 |
T |
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| Q |
319 |
cttatcatcagtatcaccgattcgtaggtttttcgcacaatttaatgtacttttgtttgtttgttttctaccttttctt |
397 |
Q |
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| T |
7890094 |
cttatcatcagtatcaccgattcgtaggtttttcgcacaatttaatgtacctttgtttgtttgttttctaccttttctt |
7890172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 7914251 - 7914333
Alignment:
| Q |
133 |
tcaagaatttctcagcccatttcaaacccactgcatgcatccttagcaatactgaaagctgctcatttttgacatctgacagg |
215 |
Q |
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| T |
7914251 |
tcaagaatttctcagcccattttaaacccactgcatgcatccttttcaataccgaaaggtgctcattttggacatctgacagg |
7914333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 1847498 - 1847447
Alignment:
| Q |
309 |
ttcatgtattcttatcatcagtatcaccgattcgtaggtttttcgcacaatt |
360 |
Q |
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| T |
1847498 |
ttcatgtattcttgtcatcaatatcaccaattcgtacgtttttcacacaatt |
1847447 |
T |
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