View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_17 (Length: 354)
Name: NF11982_low_17
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 58 - 346
Target Start/End: Complemental strand, 8555043 - 8554755
Alignment:
| Q |
58 |
tgggattatgggaagcagacaaagtagtacaaggtggacaccaacaacagatcagataagaatattgaaggatctttactacaacaatggaattagatca |
157 |
Q |
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| T |
8555043 |
tgggattatgggaagcagacaaagtagtacaaggtggacaccaacaacagatcagataagaatattgaaggatctttactacaacaatggaattagatca |
8554944 |
T |
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| Q |
158 |
ccaagtgcagaacagattcagagaatctctgctaggttaagacagtatggaaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagcta |
257 |
Q |
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| T |
8554943 |
ccaagtgcagaacagattcagagaatctctgctaggttaagacagtatggtaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagcta |
8554844 |
T |
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| Q |
258 |
gagaaagacagaagaaaaggttcacttctgatgttaatgttgttcccatcattcaaagagcaccaaacaacaatactattatctctgct |
346 |
Q |
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| T |
8554843 |
gagaaagacagaagaaaaggttcacttctgatgttaatgttgttcccatcattcaaagagcaccaaacaacaatactattatttctgct |
8554755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 35184665 - 35184617
Alignment:
| Q |
219 |
gcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaagaca |
267 |
Q |
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| T |
35184665 |
gcaagaatgtgttctattggtttcaaaatcacaaagctagagaaagaca |
35184617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 228 - 321
Target Start/End: Original strand, 24023474 - 24023567
Alignment:
| Q |
228 |
tcttttattggtttcaaaatcacaaagctagagaaagacagaagaaaaggttcacttctgatgttaatgttgttcccatcattcaaagagcacc |
321 |
Q |
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| T |
24023474 |
tcttttattggttccaaaatcacaaagctagaaaaacacagaagaaaaggttcacttctgatgttaatgttgttcctattattcaaagagcacc |
24023567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 40004968 - 40004909
Alignment:
| Q |
205 |
tggaaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaag |
264 |
Q |
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| T |
40004968 |
tggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagccagagaaag |
40004909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 45304887 - 45304828
Alignment:
| Q |
205 |
tggaaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaag |
264 |
Q |
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|||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
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| T |
45304887 |
tggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagcaagagaaag |
45304828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 40220578 - 40220637
Alignment:
| Q |
205 |
tggaaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaag |
264 |
Q |
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|||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
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| T |
40220578 |
tggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagccagagaaag |
40220637 |
T |
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