View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_18 (Length: 351)
Name: NF11982_low_18
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 35026052 - 35025735
Alignment:
| Q |
20 |
agtatatattagcatgacaaaatatggagaattagtgagaagtgtagagaagtactaaatacgaatcacaattgcggggtcaatttcgttaggagacaag |
119 |
Q |
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| T |
35026052 |
agtatatattagcatgacaaaatatggaaaattagtgagaagtgtagagaagtactaaatatgaatcacaattgcggggtcaatttcgttaggagacaag |
35025953 |
T |
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| Q |
120 |
ttaatcgagtggtccatgagttagcttgggcatcaagcttttttgctaatcgccaaannnnnnnnnnnngtccacattgtattgagacaattatttttaa |
219 |
Q |
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| T |
35025952 |
ttaatcgagtggtccatgagttagcttgggcatcaagcttttttgctaatcgccaaattttttatttttgtccacattgtattgagacaattatttttaa |
35025853 |
T |
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| Q |
220 |
tgaaatgcagtaagttttagtcatttagagaaggttgcaacttacaacaaaataagaaacacttggttaccttcttacatggtggttttactcttaactc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35025852 |
tgaaatgcagtaagttttagtcatttagagaaggttgcaacttacaacaaaataagaaacacttggttaccttcttacatggtggttttactcttaactc |
35025753 |
T |
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| Q |
320 |
tgatgggttgactttctt |
337 |
Q |
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| T |
35025752 |
tgatgggttgactttctt |
35025735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 36862951 - 36863026
Alignment:
| Q |
31 |
gcatgacaaaatatggagaattagtgagaagtgtagagaagtactaaatacgaatcacaattgcggggtcaatttc |
106 |
Q |
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|||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||| ||| ||||||||||| |
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| T |
36862951 |
gcatgacaaaatatggagaattagtgagaaacgtagaaaactactaaatatgaatcacaactgcagggtcaatttc |
36863026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 334
Target Start/End: Original strand, 36864102 - 36864147
Alignment:
| Q |
289 |
ccttcttacatggtggttttactcttaactctgatgggttgacttt |
334 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
36864102 |
ccttcttgcatggtggttttactcttaactcttatgggttgacttt |
36864147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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