View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11982_low_20 (Length: 320)

Name: NF11982_low_20
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11982_low_20
NF11982_low_20
[»] chr2 (3 HSPs)
chr2 (1-308)||(32063954-32064261)
chr2 (1-308)||(32030819-32031126)
chr2 (1-144)||(32077974-32078117)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 32064261 - 32063954
Alignment:
Q  1 tcccatacccaccggaaaagctgctccgatcgttgaagtccgattcgaagtgctagagtgaaggcatttggagtagtgttgtagaaaccaacttggaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32064261 tcccatacccaccggaaaagctgctccgatcgttgaagtccgattcgaagtgctagagtgaaggcatttggagtagtgttgtagaaaccaacttggaatg 32064162  T
Q  101 gagcattgaatatgcttatcattctgtaatcacctccatattctacaatgaagtctccaaggtcacctgaatttacaaatttaaaggtttcattttgtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32064161 gagcattgaatatgcttatcattctgtaatcacctccatattctacaatgaagtctccaaggtcacctgaatttacaaatttaaaggtttcattttgtgg 32064062  T
Q  201 aacaattgcatgagcaattaagatggcaaatgaaaagaacaataaagtgagaaatgaggttttggggttaagaaaaatagacattgttgtgtgaattgtt 300  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32064061 aacaattgcatgtgcaattaaggtggaaaatgaaaagaacaataaagtgagaaatgaggtattggggttaagaaaaatagacattgttgtgtgaattgtt 32063962  T
Q  301 gattgatg 308  Q
    || |||||    
T  32063961 gagtgatg 32063954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 32031126 - 32030819
Alignment:
Q  1 tcccatacccaccggaaaagctgctccgatcgttgaagtccgattcgaagtgctagagtgaaggcatttggagtagtgttgtagaaaccaacttggaatg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||| |||||||| || ||||||||||| ||||    
T  32031126 tcccatacccaccggaaaagctgctccgatcgttgaagaccgattcgaagagctaaagtgaatgcatttggggtagtgttataaaaaccaacttgaaatg 32031027  T
Q  101 gagcattgaatatgcttatcattctgtaatcacctccatattctacaatgaagtctccaaggtcacctgaatttacaaatttaaaggtttcattttgtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32031026 gagcattgaatatgcttatcattctgtaatcacctccatattctacaatgaagtctccaaggtcacctgaatttacaaatttaaaggtttcattttgtgg 32030927  T
Q  201 aacaattgcatgagcaattaagatggcaaatgaaaagaacaataaagtgagaaatgaggttttggggttaagaaaaatagacattgttgtgtgaattgtt 300  Q
    |||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32030926 aacaattgcatgtgcaattaaggtggaaaatgaaaagaacaataaagtgagaaatgaggttttggggttaagaaaaatagacattgttgtgtgaattgtt 32030827  T
Q  301 gattgatg 308  Q
    ||||||||    
T  32030826 gattgatg 32030819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 32078117 - 32077974
Alignment:
Q  1 tcccatacccaccggaaaagctgctccgatcgttgaagtccgattcgaagtgctagagtgaaggcatttggagtagtgttgtagaaaccaacttggaatg 100  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  32078117 tcccacacccaccagaaaagctgctccgatcgttgaagtcccattcgaagtgctagagtgaaggcatttggggtagtgttgtaaaaaccaacttggaatg 32078018  T
Q  101 gagcattgaatatgcttatcattctgtaatcacctccatattct 144  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  32078017 gagcattgaatatgtttatcattctgtaatttcctccatattct 32077974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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