View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_21 (Length: 312)
Name: NF11982_low_21
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_21 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 347 - 624
Alignment:
| Q |
11 |
cacagaaagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatcgcaaatacaaacatgggttttctgtggccgagatgga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
347 |
cacagaaagaaagaaagatgagaagagagtgtcatccattgttgagtggtatgagagagaatcgcaaatacaaacatgggttttctgtggctgagatgga |
446 |
T |
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| Q |
111 |
gtcactcacaagcatatgtgaagttatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcagtctttcttc |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
447 |
gtcactcacaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcaatctttcttc |
546 |
T |
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| Q |
211 |
aacatctctgcttctaaatatccaatccctgacgagg--tgtgtatatatgtattcatcggtgttctcttgtatctga |
286 |
Q |
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| T |
547 |
aacatctctgcttctaaatatccaatccctgacgaggtatatatatatatgtattcatcggtgttctcttgtatctga |
624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 8384 - 8154
Alignment:
| Q |
18 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatcgcaaatacaaacatgggttttctgtggccgagatggagtcactc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
8384 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactc |
8285 |
T |
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| Q |
118 |
acaagcatatgtgaagttatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
217 |
Q |
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| T |
8284 |
acaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttacaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
8185 |
T |
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| Q |
218 |
ctgcttctaaatatccaatccctgacgaggt |
248 |
Q |
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| T |
8184 |
ctgcttctatgtatccaatccctgacgaggt |
8154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 31330435 - 31330712
Alignment:
| Q |
11 |
cacagaaagaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatcgcaaatacaaacatgggttttctgtggccgagatgga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31330435 |
cacagaaagaaagaaagatgagaagagagtgtcatccattgttgagtggtatgagagagaatcgcaaatacaaacatgggttttctgtggctgagatgga |
31330534 |
T |
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| Q |
111 |
gtcactcacaagcatatgtgaagttatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcagtctttcttc |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31330535 |
gtcactcacaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcaatctttcttc |
31330634 |
T |
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| Q |
211 |
aacatctctgcttctaaatatccaatccctgacgagg--tgtgtatatatgtattcatcggtgttctcttgtatctga |
286 |
Q |
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| T |
31330635 |
aacatctctgcttctaaatatccaatccctgacgaggtatatatatatatgtattcatcggtgttctcttgtatctga |
31330712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 31315313 - 31315543
Alignment:
| Q |
18 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatcgcaaatacaaacatgggttttctgtggccgagatggagtcactc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
31315313 |
agaaagaaagatgagaagagagtgtcatccattgttgagtggtgtgagagagaatagcaaatacaaacatggattttctgtagctgagatggagtcactc |
31315412 |
T |
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| Q |
118 |
acaagcatatgtgaagttatgttcccttcactgccaatggatgatgctctcacaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
217 |
Q |
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|||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31315413 |
acaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttacaaaagatgatgaatcaagcaaggatgtgcagtctttcttcaacatct |
31315512 |
T |
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| Q |
218 |
ctgcttctaaatatccaatccctgacgaggt |
248 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
31315513 |
ctgcttctatgtatccaatccctgacgaggt |
31315543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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