View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982_low_22 (Length: 308)
Name: NF11982_low_22
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46588887 - 46588665
Alignment:
| Q |
1 |
cctattgaggtctaaattagaataaatgtatatattttttaactcttcagttttgggagaaatgagccattataactcaaagtttagcaggaagacctca |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46588887 |
cctattgaggtttaaattagaataaatgtatatattttttaactcttaagttttgggagaaatgagccattataactcaaagtttagcaggaagacctca |
46588788 |
T |
|
| Q |
101 |
ctaaaaaattgttacaaaaccatgtttgaatttgagttctctaattattcttcctttactagaacttgttaaccacttgaggaataaattttagaattta |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46588787 |
ctaaaaagttgttacaaaaccatgtttgaatttgagttctctaattattcttcctttactagaacttgtttaccacttgaggaataaattttagaattta |
46588688 |
T |
|
| Q |
201 |
aacttattacctacttgaaaagt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
46588687 |
aacttattacctacttgaaaagt |
46588665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 46588665 - 46588627
Alignment:
| Q |
253 |
ttttgttttggtttatatccaacacaacaatatgtcaat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46588665 |
ttttgttttggtttatatccaacacaacaatatgtcaat |
46588627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University