View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_26 (Length: 269)
Name: NF11982_low_26
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 1242219 - 1242470
Alignment:
| Q |
18 |
atttcaagctcggtttctaaatttagttttatgagatttccaataacacta------------------ccctagagaagcatcttattaaggatagaac |
99 |
Q |
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| T |
1242219 |
atttcatgctcggtttctaaatttagttttatgagatttccaataacactattttaaaaatagcaaaaaccctagagaagcatcttattaaggatagaac |
1242318 |
T |
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| Q |
100 |
atattgtgtgtaatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaatnnnnnnnnttcatgtaa |
199 |
Q |
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| T |
1242319 |
aaattgtgtgtaatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaat-aaaaaaattcatgcaa |
1242417 |
T |
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| Q |
200 |
ttatcaaagttaaacaaaacttcttgcagttgaaggtcattaccttcttcaac |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1242418 |
ttatcaaagttaaacaaaacttcttgcagttgaaggtcattaccttcttcaac |
1242470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 41521840 - 41521588
Alignment:
| Q |
17 |
catttcaagctcggtttctaaatttagttttatgagatttccaataacacta------------------ccctagagaagcatcttattaaggatagaa |
98 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || |
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| T |
41521840 |
catttcatgctcggtttctaaatttagttttatgagatttccattaacactattttaaaaatagcaaaaaccctagagaagcatcttattaaggatataa |
41521741 |
T |
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| Q |
99 |
catattgtgtgtaatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaatnnnnnnnnttcatgta |
198 |
Q |
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| T |
41521740 |
catattgtgtgtaatatacatgtacatgatat-ctaatgatcaggatttattggcgatctgtctttcaacaaaagaaatctaat-aaaaaaattcatgca |
41521643 |
T |
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| Q |
199 |
attatcaaagttaaacaaaacttcttgcagttgaaggtcattaccttcttcaacc |
253 |
Q |
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| T |
41521642 |
attatcaaagttaaacaaaacttcttgcagttggaggtcattaccttcttcaacc |
41521588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 472771 - 473026
Alignment:
| Q |
17 |
catttcaagctcggtttctaaatttagttttatgagatttccaataacacta------------------ccctagagaag--catcttattaaggatag |
96 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
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| T |
472771 |
catttcatgctcggtttctaaatttagttttatgagatttccaataacactattttaaaaatagcaaaaacccaagagaagtacatcttattaaggatag |
472870 |
T |
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| Q |
97 |
aacatattgtgtgtaatatacatgtacatgatatccaaatgatcaggacttattggcgatttgtctttcaacaaaagaaatctaatnnnnnnnnttcatg |
196 |
Q |
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| T |
472871 |
aacatattgtgtgtaatatacatgtacacgatatcc-aatgattaggatttattggcgatttgtctttcaacaaaagaaatctaat-aaaaaaattcatg |
472968 |
T |
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| Q |
197 |
taattatcaaagtt-aaacaaaacttcttgcagttgaaggtcattaccttcttcaacc |
253 |
Q |
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||||| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
472969 |
taattgtcaaagttaaaaaaaaacttcttgcagttggaggtcattaccttcttcaacc |
473026 |
T |
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