View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_29 (Length: 237)
Name: NF11982_low_29
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45077948 - 45078170
Alignment:
| Q |
1 |
cagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagggtcgttcgaaat |
100 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45077948 |
cagaaatatcagtgcaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagggtcgttagaaat |
45078047 |
T |
|
| Q |
101 |
tccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtttggatcaaatcccttatca |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45078048 |
tccttcaagtttgcccgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtttggatcaaatccgttatca |
45078147 |
T |
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| Q |
201 |
ggatgatctccataagaacctgt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45078148 |
ggatgatctccataagaacctgt |
45078170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45082244 - 45082466
Alignment:
| Q |
1 |
cagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagggtcgttcgaaat |
100 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45082244 |
cagaaatatcagtgcaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagggtcgttagaaat |
45082343 |
T |
|
| Q |
101 |
tccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtttggatcaaatcccttatca |
200 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45082344 |
tccttcaactttgcccgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtttggatcaaatccgttatca |
45082443 |
T |
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| Q |
201 |
ggatgatctccataagaacctgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45082444 |
ggatgatctccataagaacctgt |
45082466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 45074718 - 45074919
Alignment:
| Q |
1 |
cagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagggtcgttcgaaat |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||| |
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| T |
45074718 |
cagaaacatcagtgcaattccatggaagtttcttcttatgtgcactcatttcaatagtcgcattagaaacacaaattccagtaaaagggtcattagaaat |
45074817 |
T |
|
| Q |
101 |
tccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtttggatcaaatcccttatca |
200 |
Q |
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||| ||||||||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
45074818 |
tccatcaagtttgcctgcaatagtcacattcttggcagtaacatctctataatttatttcactaattttaggcaatgcgtttggatcaaatccattatca |
45074917 |
T |
|
| Q |
201 |
gg |
202 |
Q |
| |
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|| |
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| T |
45074918 |
gg |
45074919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 45067158 - 45067350
Alignment:
| Q |
1 |
cagaaacatcagtacaattccatggaagtttcttcttatgtgcactcatttcaatagtcacattagaaacacatattccagtaaaagggtcgttcgaaat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||| || || |||||||| || ||||| |
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| T |
45067158 |
cagaaacatcagtgcaattccatggaagattattcttctgtgcactcatttcaatagtcacattagaaatgcatatccctgtgaaagggtcattagaaat |
45067257 |
T |
|
| Q |
101 |
tccttcaagtttgcctgcaatagtcacattcttagcggtgacatctctataatttattccactaattttaggcaatgcgtttggatcaaatcc |
193 |
Q |
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||| ||||||| |||||||| |||||||||||||| | | ||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
45067258 |
tccgtcaagttgtcctgcaattgtcacattcttagcaataatatctctatagtttattccactaattttaggcaatgcttttggatcaaatcc |
45067350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 34504539 - 34504712
Alignment:
| Q |
50 |
ttcaatagtcacattagaaacacatattccagtaaaagggtcgttcgaaattccttcaagtttgcctgcaatagtcacattcttagcggtgacatctcta |
149 |
Q |
| |
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|||||||||||||||||||| |||||| || |||||||| || || |||||||||||||||| || |||| |||||||||||||| | ||||||||| |
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| T |
34504539 |
ttcaatagtcacattagaaatacatatccctgtaaaaggatcattagaaattccttcaagttgccccgcaacggtcacattcttagcaataacatctcta |
34504638 |
T |
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| Q |
150 |
taatttattccactaattttaggcaatgcgtttggatcaaatcccttatcaggatgatctccataagaacctgt |
223 |
Q |
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|| | |||||| |||||||||||||||| |||||||||||||| |||||||| || ||||||||||| ||||| |
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| T |
34504639 |
aaaataattccagtaattttaggcaatgcttttggatcaaatccattatcagggtggtctccataagaccctgt |
34504712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34504484 - 34504520
Alignment:
| Q |
1 |
cagaaacatcagtacaattccatggaagtttcttctt |
37 |
Q |
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|||||||||| || ||||||||||||||||||||||| |
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| T |
34504484 |
cagaaacatctgtgcaattccatggaagtttcttctt |
34504520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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