View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11982_low_3 (Length: 658)
Name: NF11982_low_3
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 571
Target Start/End: Complemental strand, 45643255 - 45642707
Alignment:
| Q |
19 |
taactttattattgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaat |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45643255 |
taactttattat-gacagtgttcaactatgtagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaat |
45643160 |
T |
|
| Q |
119 |
tagtactgacagcagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaa |
218 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45643159 |
tagtacagacagtagcggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaa |
45643060 |
T |
|
| Q |
219 |
ctctttgttaaggttaagccttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaacca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45643059 |
ctctttgttaaggttaagccttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttccgatcgcacccctgccgcaacaacca |
45642960 |
T |
|
| Q |
319 |
ccaccactactcctaccacacaaagtgcatcttcagctactaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatccgtcatat |
418 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45642959 |
ccaccactactcctaccatacaaagtgcatcttcagctactaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatccatcatat |
45642860 |
T |
|
| Q |
419 |
attagtgtgatgagataattttatgagaggcggtgcttcgtttattttcctcttccgtgtcattatctattaatttaatttgaattcttgtatgatctat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45642859 |
attagtgtgatgagataattttatgagaggcggtgcttcgtttattttcctcttccgtgtcattatctattaatttaatttaaattcttgtatgatctat |
45642760 |
T |
|
| Q |
519 |
tcagacttatggaggttgtagtattaatcatcaatctaggaaatcttgcaatg |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45642759 |
tcagacttatggaggttgtagtattaatcatcaatctaggaaatcttgcaatg |
45642707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 31 - 428
Target Start/End: Complemental strand, 45650508 - 45650108
Alignment:
| Q |
31 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
130 |
Q |
| |
|
||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45650508 |
tgacagtattcaactatggagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacag |
45650412 |
T |
|
| Q |
131 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaag |
230 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
45650411 |
cagtggtcccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaa |
45650312 |
T |
|
| Q |
231 |
gttaagcctt---------cttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccacca |
321 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| | ||||||||| |
|
|
| T |
45650311 |
gttaaggcttcttctagtgcttcttctgctccttctgcaacaccatcgccatcagggaaaggttcaccttctgatggcacccctgctg---caaccacca |
45650215 |
T |
|
| Q |
322 |
ccactactcctaccacacaaagtgcatcttcagctactaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatccgtcatatatt |
421 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||| |||||||||||||| |||||||||||| || ||||| | |
|
|
| T |
45650214 |
ccactactccttccacacaaagtgcatcttcatctactagtatctcaccaattgttgctttatttttcactgtttcatggatcttgatcagttatatact |
45650115 |
T |
|
| Q |
422 |
agtgtga |
428 |
Q |
| |
|
|||||| |
|
|
| T |
45650114 |
ggtgtga |
45650108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 45703063 - 45703282
Alignment:
| Q |
19 |
taactttattatt--gacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattca |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45703063 |
taactttattattatgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactagaaattca |
45703162 |
T |
|
| Q |
117 |
attagtactgacagcagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggca |
213 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||||||| | ||||| |
|
|
| T |
45703163 |
attagtacagacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggca |
45703262 |
T |
|
| Q |
214 |
tgaaactctttgttaaggtt |
233 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
45703263 |
tgaaactctctgttaaggtt |
45703282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 45886889 - 45887094
Alignment:
| Q |
31 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||| | |
|
|
| T |
45886889 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttaatgaaagtgactataattcatgcacaactagaaattcaattagtacagacgg |
45886988 |
T |
|
| Q |
131 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggcatgaaactctttgtt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||||||| | |||||||||||||| |||| |
|
|
| T |
45886989 |
tagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgtt |
45887088 |
T |
|
| Q |
228 |
aaggtt |
233 |
Q |
| |
|
|||||| |
|
|
| T |
45887089 |
aaggtt |
45887094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 257 - 410
Target Start/End: Original strand, 45703423 - 45703573
Alignment:
| Q |
257 |
tgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatcttcagct |
356 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| ||||||| || |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
45703423 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
45703519 |
T |
|
| Q |
357 |
actaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatc |
410 |
Q |
| |
|
||| |||||||||| |||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
45703520 |
acttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatc |
45703573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 257 - 410
Target Start/End: Original strand, 45887229 - 45887379
Alignment:
| Q |
257 |
tgcaacaccattaccatcagggaaaggttcaccttccaatcgcacccctgccgcaacaaccaccaccactactcctaccacacaaagtgcatcttcagct |
356 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| ||||||| || |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
45887229 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
45887325 |
T |
|
| Q |
357 |
actaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatc |
410 |
Q |
| |
|
||| |||||||||| |||||| |||||||| | |||||| |||||||||||| |
|
|
| T |
45887326 |
acttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatc |
45887379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 45887123 - 45887213
Alignment:
| Q |
238 |
cttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttc---caatcgcacccctgccgcaacaaccaccaccac |
325 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||| |||||||||||||| | || |||||| ||||||||||| |||||||| |
|
|
| T |
45887123 |
cttcttctgctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccac |
45887213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 591 - 627
Target Start/End: Complemental strand, 45642686 - 45642650
Alignment:
| Q |
591 |
gtgcttaatatactgaatgatcattggttactgagtc |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45642686 |
gtgcttaatatactgaatgatcattggttactgagtc |
45642650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 238 - 325
Target Start/End: Original strand, 45703317 - 45703407
Alignment:
| Q |
238 |
cttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcaccttc---caatcgcacccctgccgcaacaaccaccaccac |
325 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||| |||||||||||||| | || |||||| ||||||||||| |||||||| |
|
|
| T |
45703317 |
cttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccccgccgcaacaacaaccaccac |
45703407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 30054843 - 30054756
Alignment:
| Q |
58 |
ggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaac |
145 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| ||||||||| ||| |||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
30054843 |
ggcacacagtggattaagttaaagaaagtgactataaatcatgcataaccagaaattcaattagtacagacagtagcggtgccacaac |
30054756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 410
Target Start/End: Original strand, 1193589 - 1193689
Alignment:
| Q |
313 |
caaccaccaccactactcctaccacacaaagtgcatcttcagctactaccatctcaccaactgttg---ctttctttttcactgtttcctggatcttgat |
409 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||||| ||| ||||| ||||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
1193589 |
caactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgcttctttatttttcattgtttcatggatcttgat |
1193688 |
T |
|
| Q |
410 |
c |
410 |
Q |
| |
|
| |
|
|
| T |
1193689 |
c |
1193689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University