View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_6 (Length: 501)
Name: NF11982_low_6
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 193 - 485
Target Start/End: Original strand, 32195609 - 32195903
Alignment:
| Q |
193 |
tatatatataggatacatagacttttacatttgaattctctcattagggttcttgaagattattttgccaaaaacatttttaaacaatatgtggagatta |
292 |
Q |
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| T |
32195609 |
tatatatataggatacatagacttttacatttgaattctctcattatggttcttgaagattattttgccaaaaacatttttaaacaatatgtggagatta |
32195708 |
T |
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| Q |
293 |
ataataaatgtctgcattcttnnnnnnnnnnnnn--tgtctacatgacttgctttttattacacgattgatttttcttggactaaaagttgtcgtgcatt |
390 |
Q |
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| T |
32195709 |
ataataaatgtctgcattcttcaaaaaaaaaaaaaatgtctacatgacttgctttttattacacgattgatttttcttggactaaaagttgtcgtgcatt |
32195808 |
T |
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| Q |
391 |
atattcttcaccaactgaaattaaatgattatttctcaaaaactttttgatacattctaataaatcagtaatttcacttttgtgaatgtaaaaat |
485 |
Q |
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| T |
32195809 |
atattcttcaccaactgaaattaaatgattatttctcaaaaactttttgatacattctaataaatcaataatttcacttttgtgaatgtaaaaat |
32195903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 193 - 464
Target Start/End: Original strand, 32197968 - 32198238
Alignment:
| Q |
193 |
tatatatataggatacatagacttttacatttgaattctctcattagggttcttgaagattattttgccaaaaacatttttaaacaatatgtggagatta |
292 |
Q |
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| T |
32197968 |
tatatataaatgatacatagacttttacatttggattatctcattagggttcaagaagattatttggccaaaaacatttttaaaaaatatgtggagatta |
32198067 |
T |
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| Q |
293 |
ataataaatgtctgcattcttnnnnnnnnnnnnntgtctacatgacttgctttttattacacgattgatttttcttggactaaaagttgtcgtgcattat |
392 |
Q |
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| T |
32198068 |
ataataaatgtctacattgttcaaaaaaaaaaaatgtctatatgacttgctttttattacacgattgatttttcttggactaaaagttgccgtgtattat |
32198167 |
T |
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| Q |
393 |
attcttcaccaactgaaattaaatgattatttctcaaaaactttttgatacattctaataaatcagtaattt |
464 |
Q |
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| T |
32198168 |
attcttcaccaagtgaaattaaatgattatttctcaaaaactttttgatacattctaataaat-agtaattt |
32198238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 43 - 193
Target Start/End: Original strand, 32195426 - 32195580
Alignment:
| Q |
43 |
cagcccgtgccgccagcttgattattaggtaatgatagnnnnnnnnnc----attattcttagctcacttttcctcttttatcaagaaagattgtttctc |
138 |
Q |
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| T |
32195426 |
cagcccgtgccgccagcttgattattaggtaatgatagttttttttttttctattattcttagctcacttttcctcttttatcaagaaagattggttctc |
32195525 |
T |
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| Q |
139 |
actttannnnnnnatttacaggacgatcgactgctcataatggattatgtttttt |
193 |
Q |
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| T |
32195526 |
actttatttttttatttacagaacggtcgactgctcataatggattatgtttttt |
32195580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 32197681 - 32197858
Alignment:
| Q |
20 |
cacctgagcccactattgagtagcagcccgtgccgccagcttgattattaggtaatga-tagnnnnnnnnncattattcttagctcacttttcctctttt |
118 |
Q |
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| T |
32197681 |
cacctgagcctaccatcgatttgcagcccgtgccgccagcttgattattaggtaatgaataaaaaaaattccattattcctagcttacttttcctctttt |
32197780 |
T |
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| Q |
119 |
atcaagaaagattgtttctcacttta----nnnnnnnatttacaggacgatcgactgctcataatggattatgttttt |
192 |
Q |
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| T |
32197781 |
atcaagaaagattgtttctcactttaattttttatttatttataggacggtcgactgctcataatgggttatgttttt |
32197858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 32193990 - 32194032
Alignment:
| Q |
9 |
aggagcagagacacctgagcccactattgagtagcagcccgtg |
51 |
Q |
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| T |
32193990 |
aggagcagtgacacttgagcccactattgagtagcagcccgtg |
32194032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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