View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_8 (Length: 491)
Name: NF11982_low_8
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Complemental strand, 56470306 - 56469851
Alignment:
| Q |
18 |
tttttggggaaggaggtttgataatgtttgatgttaattcagtaaagcctgcatacagcatacctgatctactagtagttatatttcttggagttattgg |
117 |
Q |
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| T |
56470306 |
tttttggggaaggaggtttgataatgtttgatgttaattcagtaaagcctgcatacagcatacctgatctactagtagttatatttcttggagttattgg |
56470207 |
T |
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| Q |
118 |
aggtctcttgggaagcctttataattatcttgtggataaggtccttcgcacttacaacatcattaatgagtatgtcattccccctccgccccatttcgaa |
217 |
Q |
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| T |
56470206 |
aggtctcttgggaagcctttataattatcttgtggataaggtccttcgcacttacaacatcattaatgagtatgtcattccccctccgccccatttcgaa |
56470107 |
T |
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| Q |
218 |
ttttcnnnnnnnattgtagtattcccgggtgtgaatgattatatatatttattgcaggaaaggccctatatttaaaataatacttgtgatgattatatca |
317 |
Q |
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| T |
56470106 |
ttttctttttttattgtagtattcccgggtg-gaatgattttatatatttattgcaggaaaggccctatatttaaaataatacttgtgatgattatatca |
56470008 |
T |
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| Q |
318 |
tttttgacctcttgctgttcatttggggttccatggctatcaaagtgcatcccttgtccttctcatgtgggggatcagtgcccaaccgtagggcattctg |
417 |
Q |
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| T |
56470007 |
tttttgacctcttgctgttcatttggggttccatggctatcaaagtgcatcccttgtcctcctcatgtgggggatcagtgcccaaccgtagggcattctg |
56469908 |
T |
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| Q |
418 |
gacactacaagaatttccaatgtcctcctaatcactacaatgacctcgcttctctct |
474 |
Q |
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| T |
56469907 |
gacactacaagaatttccaatgtcctcctaatcactacaatgacctcgcttctctct |
56469851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 459
Target Start/End: Complemental strand, 47779666 - 47779629
Alignment:
| Q |
422 |
ctacaagaatttccaatgtcctcctaatcactacaatg |
459 |
Q |
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| T |
47779666 |
ctacaagaaattccaatgccctcctaatcactacaatg |
47779629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 154093 - 154224
Alignment:
| Q |
41 |
atgtttgatgttaattcagtaaagcctgcatacagcatacctgatctactagtagttatatttcttggagttattggaggtctcttgggaagcctttata |
140 |
Q |
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| T |
154093 |
atgtttgatgttaattctgcaaagcctgcctacaccacacctgacctcctcgcagttatatttcttggagtcattggaggtctcatgggaagcttttaca |
154192 |
T |
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| Q |
141 |
attatcttgtggataaggtccttcgcacttac |
172 |
Q |
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| T |
154193 |
attatcttgtcgataaagtccttcgcacttac |
154224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 459
Target Start/End: Complemental strand, 2334161 - 2334124
Alignment:
| Q |
422 |
ctacaagaatttccaatgtcctcctaatcactacaatg |
459 |
Q |
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| T |
2334161 |
ctacaagaaattccaatgccctcctaatcactacaatg |
2334124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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