View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11982_low_9 (Length: 472)
Name: NF11982_low_9
Description: NF11982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11982_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 19758771 - 19758432
Alignment:
| Q |
1 |
cagacaatacacctttgcttctctcttagacgaagataatcattttgctgaagaacaaattcttgctgatttgaaatttacatttcccaagtatattc-- |
98 |
Q |
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| T |
19758771 |
cagacaatacacatttgcttctctcttagacgaagataatcattttgctgaagaacaaattcttgctgatttgaaatttacatttcccaagtatatccat |
19758672 |
T |
|
| Q |
99 |
--ttacccaccaatttgattccttgtaattt-attcaagtctattaaatgannnnnnnnnnnnnaaataaatttactatgtgtgtgtttcactatctaaa |
195 |
Q |
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| T |
19758671 |
ccttacccaccaatttgattccttgtaattttattcaagtctattaaatgatttttatttttttaaataaatttactatgtgtgtgtttcactatctaaa |
19758572 |
T |
|
| Q |
196 |
tgaaaacatcatagaaaataccaatcacatacttattattttaattaaatttggagtccatgtagtaaatgattacacacattgatttatacatcacatt |
295 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
19758571 |
tgaaaacatcatagaaaataccaaccacatacttattattttaattaaatttggagtccttgcagtaaatgattacacacattgatttatacatcacatt |
19758472 |
T |
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| Q |
296 |
agtgattgttaggtcgagattagacaatccagatttcaag |
335 |
Q |
| |
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| T |
19758471 |
agtgattgttagatcgagatcagacaatccagatttcaag |
19758432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 372 - 466
Target Start/End: Complemental strand, 19758399 - 19758305
Alignment:
| Q |
372 |
tctgcatcaaaatatacatcgtatggtctcgatctaactagcactgatgcactaattttgatattcccataatgccaccaaatacttcttctcac |
466 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
19758399 |
tctgcatcaaaatatacatcgtgtgatctcgatctaactagcactgatgcactaattttgatattcccataatgccaccaaatatttcttgtcac |
19758305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 24138485 - 24138359
Alignment:
| Q |
4 |
acaatacacctttgcttctctcttagacgaagataatcattttgctgaagaacaaattcttgctgatttgaaatttacatttcccaagtatattcttacc |
103 |
Q |
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|||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||| |||| |
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| T |
24138485 |
acaatacacctttgcttctctcttggacgaagataatgattttgctgaagagcaaattctttctgatttaaaatctacatttcccaagtatatccttatt |
24138386 |
T |
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| Q |
104 |
caccaatttgattccttgtaatttatt |
130 |
Q |
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|||| ||| ||||| |||||||||||| |
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| T |
24138385 |
cacctattcgattctttgtaatttatt |
24138359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 295
Target Start/End: Complemental strand, 24138303 - 24138193
Alignment:
| Q |
185 |
cactatctaaatgaaaacatcatagaaaataccaatcacatacttattattttaattaaatttggagtccatgtagtaaatgattacacacattgattta |
284 |
Q |
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||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || | || || |
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| T |
24138303 |
cactatctatatgaaaacatcatagaaaatatcaaacacatacttattattttaattaaatttggagtccatgttgtaaatgattacactcagttatgta |
24138204 |
T |
|
| Q |
285 |
tacatcacatt |
295 |
Q |
| |
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| ||||||||| |
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| T |
24138203 |
ttcatcacatt |
24138193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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