View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11983_high_10 (Length: 236)
Name: NF11983_high_10
Description: NF11983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11983_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 14882474 - 14882695
Alignment:
| Q |
1 |
tacctcctaatcgtagcctattaagagacaaagagtgtcccaaatttgaaggaatttcaccatcaaacacattacctgtgacatcaaaagaaagaaaatc |
100 |
Q |
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| T |
14882474 |
taccgcctagtcttagcctattaagagaaaaagagtttcccaaatttgaaggaatttcaccatcaaacacattacctgtgacatcaaaagaaagaaaatc |
14882573 |
T |
|
| Q |
101 |
tttggagctacacaatggagccaaacttccattcagcctattctttgaaagattaactcttgtcatatttgcaacatccaccatttgctgaggaatacta |
200 |
Q |
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| T |
14882574 |
tctggagctacacaatggagccaaacttccattcagcctattctttgaaagattaactcttgtcaaatttgctacattcaccatttgctgaggaatacca |
14882673 |
T |
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| Q |
201 |
ccttcaagagaattgttgtaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
14882674 |
ccttcaagagaattgttgtaaa |
14882695 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 39005273 - 39005104
Alignment:
| Q |
51 |
ggaatttcaccatcaaacacattacctgtgacatcaaaagaaagaaaatctttggagctacacaatggagccaaacttccattcagcctattctttgaaa |
150 |
Q |
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|||||||||||||||||| ||||| | || ||||| |||| |||||| ||| ||||||||||| | ||| | ||| ||||||| ||||||||||||| |
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| T |
39005273 |
ggaatttcaccatcaaactcattatcggtaacatcgaaagtaagaaacgatttagagctacacaaagcagctatactgccattcaatctattctttgaaa |
39005174 |
T |
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| Q |
151 |
gattaactcttgtcatatttgcaacatccaccatttgctgaggaatactaccttcaagagaattgttgta |
220 |
Q |
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|||| || || |||| ||||| |||| | || ||| ||||||| ||||||||||||| |||||||| |
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| T |
39005173 |
gattcaccctggtcaagtttgctacatttatcaattggtgaggaaggttaccttcaagagagttgttgta |
39005104 |
T |
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