View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11983_high_8 (Length: 240)
Name: NF11983_high_8
Description: NF11983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11983_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 1048813 - 1048608
Alignment:
| Q |
1 |
cacagactttatgtttttataccgcaatcatattagtaaataaaaatgtagaaaatatattttttaattcctctatatgtataactttcattttagtctc |
100 |
Q |
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| T |
1048813 |
cacagactttatgtttttataccgcaatcatattagtaaataaaaatgtagaaaatatattttttaattcctctatatgta--------------gtctc |
1048728 |
T |
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| Q |
101 |
tttgaaacacttcttcaaattttggttcctataaattttttgttatcaattttagtctttgtttgactaatcattatgttgaaggcaaattaataccata |
200 |
Q |
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| T |
1048727 |
ttcgaaacacttgttcaaattttggttcctataaattttttgttatcaattttagtctttgtttgactaatcattatgttgaaggcaaattaataccata |
1048628 |
T |
|
| Q |
201 |
aacataaagtctttaaacta |
220 |
Q |
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|||||||||||||||||||| |
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| T |
1048627 |
aacataaagtctttaaacta |
1048608 |
T |
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