View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11983_high_9 (Length: 239)

Name: NF11983_high_9
Description: NF11983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11983_high_9
NF11983_high_9
[»] chr1 (8 HSPs)
chr1 (23-223)||(27432353-27432553)
chr1 (32-223)||(27444057-27444252)
chr1 (120-223)||(27220703-27220806)
chr1 (120-223)||(27214741-27214844)
chr1 (120-212)||(27207370-27207462)
chr1 (158-220)||(27388702-27388764)
chr1 (158-220)||(27416342-27416404)
chr1 (158-223)||(27409658-27409723)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 27432353 - 27432553
Alignment:
Q  23 tgtatatgtttcatttgtatacatgcacttattttatttttgacaaagacataaattaattaagacggcatattttgtttgatcgtgaagtttaatttga 122  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27432353 tgtatacgtttcatttgtatacatgcacttattttatttttgacaaagacataaattaattaagacggcatattttgtttgatcgtgaagtttaatttga 27432452  T
Q  123 tgggcagaaggtgatggcgtaatcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttcttg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27432453 tgggcagaaggtgatggcgtaatcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttcttg 27432552  T
Q  223 a 223  Q
    |    
T  27432553 a 27432553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 32 - 223
Target Start/End: Complemental strand, 27444252 - 27444057
Alignment:
Q  32 ttcatttgtatacatgcacttattttatttttgacaaaga----cataaattaattaagacggcatattttgtttgatcgtgaagtttaatttgatgggc 127  Q
    |||||||||||||||||||||||||||||||||||||| |    || ||||||||||||||||||||||||||||| || || |||| ||  |||||| |    
T  27444252 ttcatttgtatacatgcacttattttatttttgacaaaaattaacaaaaattaattaagacggcatattttgtttggtcatggagttcaagctgatggac 27444153  T
Q  128 agaaggtgatggcgtaatcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttcttga 223  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27444152 agaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcactggttcttga 27444057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 27220703 - 27220806
Alignment:
Q  120 tgatgggcagaaggtgatggcgtaatcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttc 219  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27220703 tgatggacagaaggtgatggcgtagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcaccggggcattggttc 27220802  T
Q  220 ttga 223  Q
    ||||    
T  27220803 ttga 27220806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 27214741 - 27214844
Alignment:
Q  120 tgatgggcagaaggtgatggcgtaatcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttc 219  Q
    |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27214741 tgatggacagaaggtgatggcatagtcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcactggttc 27214840  T
Q  220 ttga 223  Q
    ||||    
T  27214841 ttga 27214844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 27207370 - 27207462
Alignment:
Q  120 tgatgggcagaaggtgatggcgtaatcgggtcttgcaaagcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggca 212  Q
    |||||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||    
T  27207370 tgatgggcagaaggtgattgcatagtcgggtcttgcaaagcaagtgaaaatgctgctcttatcgtcgtaagcataactgtaagcaccggggca 27207462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 27388702 - 27388764
Alignment:
Q  158 agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttct 220  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  | || ||||||||||    
T  27388702 agcaagtgaaagtgctgctcttatcatcgtaagcatagctataagcttctggacattggttct 27388764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 27416404 - 27416342
Alignment:
Q  158 agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttct 220  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| | || ||||||||||    
T  27416404 agcaagtgaaagtgctgctattatcatcgtaagcatagctataagcatcaggacattggttct 27416342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 27409658 - 27409723
Alignment:
Q  158 agcaagtgaaagtgctgctcttatcgtcgtaagcatagctataagcacccgggcattggttcttga 223  Q
    |||||||||||||||||||| |||  ||||||||||||||||| ||| | || |||||||||||||    
T  27409658 agcaagtgaaagtgctgctcgtattatcgtaagcatagctataggcatcaggacattggttcttga 27409723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University