View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11983_low_1 (Length: 495)
Name: NF11983_low_1
Description: NF11983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11983_low_1 |
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| [»] scaffold0317 (2 HSPs) |
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Alignment Details
Target: scaffold0317 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 264 - 474
Target Start/End: Original strand, 19638 - 19848
Alignment:
| Q |
264 |
ggattgatggagactatcagggtttcaagaatgagattgaaattcaaattttggggatagggggcgccaaaaaattaggttaagttaagtgggattaggg |
363 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19638 |
ggattgatggagactatcagggtttcaagaatgaatttgaaattaaaattttggggatagggggcgccaaaaaattaggttaagttaagtgggattaggg |
19737 |
T |
|
| Q |
364 |
tttgaatgttagctagctaggattagatataaaagatttgtactaaactctaacccgtgcgatgcacaggtattgtagagtttcatatataactatcgtt |
463 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19738 |
tttggatgttagctagctaggattagatataaaagatatgtactaaactctaacacgtgcgatgcacaggttttgtagagtttcatatataactatcgtt |
19837 |
T |
|
| Q |
464 |
cagtagaagta |
474 |
Q |
| |
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||||||||||| |
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| T |
19838 |
cagtagaagta |
19848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 19431 - 19627
Alignment:
| Q |
1 |
agaagagtagaggttccgatttgagcaagaagaaagtgttgggtcggaatcagcactagatgcagcggaatcaacaccgactgcggattggccagagttg |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
19431 |
agaagagtagaggttctgatttgagcaagaagaaagtgttgggtcggaatcaacaccggatgcggcgaaatcaacaccgactgcggattggccagagttg |
19530 |
T |
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| Q |
101 |
gtgccgccaggatgatggtggtgatacagcggagcctgatggattctgggggaggggtcgatggtggcattggcatggagagaaagtgagagaggga |
197 |
Q |
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| T |
19531 |
gtgccgccaagatgatggtggtgatacagcggagcctgatggattctaggggaggggtcgatggtggcattggcatggagagaaagtgagagaggga |
19627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 455
Target Start/End: Original strand, 30694342 - 30694392
Alignment:
| Q |
405 |
actaaactctaacccgtgcgatgcacaggtattgtagagtttcatatataa |
455 |
Q |
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|||| ||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
30694342 |
actagactctaacccgtgcgatgcacgggttttgtagagtttcatatataa |
30694392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 455
Target Start/End: Original strand, 45730302 - 45730353
Alignment:
| Q |
404 |
tactaaactctaacccgtgcgatgcacaggtattgtagagtttcatatataa |
455 |
Q |
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||||| |||||||||||| |||||| | ||| |||||||||||||||||||| |
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|
| T |
45730302 |
tactatactctaacccgttcgatgcgcgggttttgtagagtttcatatataa |
45730353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 11394391 - 11394357
Alignment:
| Q |
18 |
gatttgagcaagaagaaagtgttgggtcggaatca |
52 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |
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| T |
11394391 |
gatttgagcaagaagaaagtgttgggttggaatca |
11394357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 55877176 - 55877128
Alignment:
| Q |
3 |
aagagtagaggttccgatttgagcaagaagaaagtgttgggtcggaatc |
51 |
Q |
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| T |
55877176 |
aagagaagaggttctaatttgagcaagaagaaagtgttgggtcggaatc |
55877128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 452
Target Start/End: Complemental strand, 19878935 - 19878888
Alignment:
| Q |
405 |
actaaactctaacccgtgcgatgcacaggtattgtagagtttcatata |
452 |
Q |
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|||| |||||||||||||||||| ||| || ||||||||||||||||| |
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|
| T |
19878935 |
actagactctaacccgtgcgatgtacaagttttgtagagtttcatata |
19878888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 7850480 - 7850523
Alignment:
| Q |
9 |
agaggttccgatttgagcaagaagaaagtgttgggtcggaatcag |
53 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
7850480 |
agaggttctgatttgagcaagaagaaagtgtt-ggtcggaatcag |
7850523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 26909738 - 26909772
Alignment:
| Q |
18 |
gatttgagcaagaagaaagtgttgggtcggaatca |
52 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
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| T |
26909738 |
gatttgagcaagaaaaaagtgttgggtcggaatca |
26909772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 460
Target Start/End: Complemental strand, 10484863 - 10484808
Alignment:
| Q |
405 |
actaaactctaacccgtgcgatgcacaggtattgtagagtttcatatataactatc |
460 |
Q |
| |
|
||||||||| ||||||| ||||| || ||| |||||||||||||||||||| |||| |
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|
| T |
10484863 |
actaaactccaacccgtacgatgtacgggttttgtagagtttcatatataagtatc |
10484808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 32440330 - 32440364
Alignment:
| Q |
18 |
gatttgagcaagaagaaagtgttgggtcggaatca |
52 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |
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| T |
32440330 |
gatttgagcaagaagaaagtgttgggttggaatca |
32440364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 465
Target Start/End: Original strand, 34355284 - 34355313
Alignment:
| Q |
436 |
ttgtagagtttcatatataactatcgttca |
465 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
34355284 |
ttgtagagtttcatatataactatcgttca |
34355313 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 26852321 - 26852288
Alignment:
| Q |
9 |
agaggttccgatttgagcaagaagaaagtgttgg |
42 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
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|
| T |
26852321 |
agaggttctgatttgagcaagaagaaagtgttgg |
26852288 |
T |
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