View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11983_low_4 (Length: 399)
Name: NF11983_low_4
Description: NF11983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11983_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 1048595 - 1048229
Alignment:
| Q |
19 |
atcacatggtaaatcctccaatgagaatcaaagcaaatgcagtttttgctgctgacaaataagaaatcgggaatataccaagacatatttcaaatcttta |
118 |
Q |
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| T |
1048595 |
atcacatggtaaatcttccaatgagaatcaaagcaaatgcagtttttgctgctgacaaataagaaatcgggaatataccaagacatatttcaaatcttta |
1048496 |
T |
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| Q |
119 |
cctacaaaattaggttggaag----tagaaactaatcacatagagtatgcattttccaagccggttattaccccattatccgttgcaattgactagtgac |
214 |
Q |
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| T |
1048495 |
cctacaaaattaggttggaaggaagtagaaactaatcacatagagtatgcattttccaagccggttattaccccattatccgttgcaattgactagtgac |
1048396 |
T |
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| Q |
215 |
aactagggacatgtaagtaagtaaacattgccatatatgtcacatttagtactgatcatcaaacggagtgcatatgatatctagatgaagaaaaagatac |
314 |
Q |
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| T |
1048395 |
aactagggacatgtaagtaagtaaacattgccatatatgtcacatttagtactgatcatcaaacggagtgcatatgatatctagatggagaaaaatatac |
1048296 |
T |
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| Q |
315 |
tggagtctgcgttgaacagcaagattgacccatttagtgatattaggaaagccaaagcgactgacat |
381 |
Q |
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| T |
1048295 |
tggagtctgcgttgaacagcaagattgacccatttagtgatattaggaaagccaaagcgactgacat |
1048229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 1013514 - 1013592
Alignment:
| Q |
71 |
tgacaaataagaaatcgggaatataccaagacatatttcaaatctttacctacaaaattaggttggaagtagaaactaa |
149 |
Q |
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| T |
1013514 |
tgacaaataagcaatcaggaatataccaagttatatttcaaatctttacctacaaaattaggtagaaagtagaaactaa |
1013592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 40639460 - 40639414
Alignment:
| Q |
103 |
atatttcaaatctttacctacaaaattaggttggaagtagaaactaa |
149 |
Q |
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| T |
40639460 |
atatttcaaatctttacctacaaaattaggtagaaagtagaaactaa |
40639414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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