View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11983_low_5 (Length: 322)
Name: NF11983_low_5
Description: NF11983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11983_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 7008921 - 7009227
Alignment:
| Q |
1 |
caaaatccaaaggtatatagacaagaatcttaatatcaacatgattcacttgattattttttgccagtaacttgctgtatatagtcatggatttcccatt |
100 |
Q |
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| T |
7008921 |
caaaatccaaaggtatatagacaagaatcttaatatcaacatgattcacttgattattttttgctagtaacttgctgtatatagtcatggatttcccatt |
7009020 |
T |
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| Q |
101 |
ggtaaattacatttaaccgttatgaggtatgattaattataggtaaccttatagattgcatcaatatttagagtggaccctttagataggtacttttgtg |
200 |
Q |
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| T |
7009021 |
ggtaaattacatttaaccgttatgaggtatgattaattataggtaaccttatagattgcatcaatatttagagtggaccctttagataggtacttttgtg |
7009120 |
T |
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| Q |
201 |
aacaaggttactcaaagataaagaaatagataagaagtttcacctcctctactcaaactatacaacatcacacactttttaatacatgaatagtcatata |
300 |
Q |
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| T |
7009121 |
aacaaggttactcaaagataaagaaatagataagaagtttcacctcctctactcaaactatacaacatcacacattttttaatacatgaatagtcatata |
7009220 |
T |
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| Q |
301 |
tgtattt |
307 |
Q |
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||||||| |
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| T |
7009221 |
tgtattt |
7009227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 7011320 - 7011481
Alignment:
| Q |
91 |
atttcccattggtaaattacatttaaccgttatgaggtatgattaattataggtaaccttatagattgcatcaatatttagagtggaccctttagatagg |
190 |
Q |
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||||||||||| |||| | |||||| ||||| |||||||||| |||| |||||||| ||| |||||||||| || || ||| |||||||||||||||| |
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| T |
7011320 |
atttcccattgataaagt-catttagccgttctgaggtatgactaatgataggtaatcttttagattgcattaacttt--gaggggaccctttagatagg |
7011416 |
T |
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| Q |
191 |
tacttttgtgaacaaggttactcaaagataaagaaatagataagaagtttcacctcctctactca |
255 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |||| | |||||| |
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| T |
7011417 |
tacttttgtgaacaaggttacttcaagataaagaaatagataagaagtttctcctcttttactca |
7011481 |
T |
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