View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11983_low_9 (Length: 261)

Name: NF11983_low_9
Description: NF11983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11983_low_9
NF11983_low_9
[»] chr4 (4 HSPs)
chr4 (19-251)||(20019663-20019895)
chr4 (19-192)||(20016076-20016250)
chr4 (110-190)||(22672109-22672189)
chr4 (129-179)||(11032910-11032960)
[»] chr2 (4 HSPs)
chr2 (111-222)||(20537975-20538086)
chr2 (90-179)||(36577366-36577456)
chr2 (111-167)||(6538846-6538902)
chr2 (126-167)||(7174371-7174412)
[»] chr3 (42 HSPs)
chr3 (90-221)||(803180-803311)
chr3 (102-209)||(989366-989473)
chr3 (88-227)||(2459227-2459366)
chr3 (110-239)||(13479515-13479647)
chr3 (103-227)||(2696707-2696831)
chr3 (117-221)||(1940568-1940672)
chr3 (123-189)||(4157939-4158005)
chr3 (104-179)||(2644338-2644413)
chr3 (104-179)||(2659128-2659203)
chr3 (127-206)||(3754573-3754652)
chr3 (102-181)||(4142108-4142187)
chr3 (127-221)||(3745966-3746060)
chr3 (102-227)||(956333-956458)
chr3 (104-181)||(1931130-1931207)
chr3 (117-221)||(968629-968733)
chr3 (118-186)||(1007454-1007522)
chr3 (123-186)||(1022482-1022545)
chr3 (132-190)||(997565-997623)
chr3 (132-190)||(1013955-1014013)
chr3 (117-179)||(2442039-2442101)
chr3 (128-178)||(2631358-2631408)
chr3 (112-221)||(1936964-1937073)
chr3 (124-217)||(7432050-7432143)
chr3 (128-179)||(2456249-2456300)
chr3 (104-179)||(2476634-2476709)
chr3 (104-179)||(7334215-7334290)
chr3 (104-179)||(9561961-9562036)
chr3 (104-178)||(2492083-2492157)
chr3 (128-178)||(7442977-7443027)
chr3 (123-224)||(2678394-2678495)
chr3 (130-179)||(13498224-13498273)
chr3 (128-168)||(746383-746423)
chr3 (128-220)||(1891064-1891156)
chr3 (123-167)||(44001607-44001651)
chr3 (128-179)||(754609-754660)
chr3 (128-179)||(771499-771550)
chr3 (104-179)||(7324407-7324482)
chr3 (104-179)||(9565805-9565880)
chr3 (123-224)||(2686307-2686411)
chr3 (130-180)||(9608346-9608396)
chr3 (127-177)||(23197014-23197064)
chr3 (104-148)||(9594600-9594644)
[»] chr5 (15 HSPs)
chr5 (123-190)||(23766857-23766924)
chr5 (123-190)||(23816705-23816772)
chr5 (123-191)||(23861021-23861089)
chr5 (102-181)||(11081811-11081890)
chr5 (130-179)||(20292995-20293044)
chr5 (123-184)||(23769641-23769702)
chr5 (123-184)||(23819489-23819550)
chr5 (123-191)||(23814088-23814156)
chr5 (130-179)||(20301443-20301492)
chr5 (130-167)||(20305868-20305905)
chr5 (130-167)||(20310272-20310309)
chr5 (123-184)||(23764255-23764316)
chr5 (127-227)||(41973469-41973570)
chr5 (129-181)||(3181715-3181767)
chr5 (123-191)||(23732155-23732223)
[»] chr1 (5 HSPs)
chr1 (101-171)||(25609350-25609420)
chr1 (127-180)||(51858605-51858658)
chr1 (125-180)||(51381452-51381507)
chr1 (127-180)||(51756749-51756802)
chr1 (127-180)||(51854946-51854999)
[»] chr8 (1 HSPs)
chr8 (112-221)||(19727839-19727948)
[»] scaffold0044 (1 HSPs)
scaffold0044 (128-180)||(89142-89194)
[»] chr6 (5 HSPs)
chr6 (123-173)||(1442103-1442153)
chr6 (127-177)||(19119065-19119115)
chr6 (127-177)||(19126359-19126409)
chr6 (127-180)||(4183000-4183053)
chr6 (127-180)||(4743844-4743897)
[»] scaffold0200 (1 HSPs)
scaffold0200 (127-227)||(777-878)
[»] chr7 (1 HSPs)
chr7 (125-179)||(1078157-1078211)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 20019663 - 20019895
Alignment:
Q  19 catttgccatttccaatacactgcagcagtactttgtcatcctcaaaagtatataaaacgttgaacaacatataagatatactaggatcttgcatgttag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20019663 catttgccatttccaatacactgcagcagtactttgtcatcctcaaaagtatataaaaccttgaacaacatataagatttactaggatcttgcatgttag 20019762  T
Q  119 aaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20019763 aaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacc 20019862  T
Q  219 caaggtcaatttggacacatccaatccttcatc 251  Q
    ||||||||| ||||||||||||| |||||||||    
T  20019863 caaggtcaagttggacacatccactccttcatc 20019895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 20016076 - 20016250
Alignment:
Q  19 catttgccatttccaatacactgcagcagtactttgtcatcctcaaaagtatataaaacgttgaacaacatataagatatactaggatcttgcatgttag 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||| ||| ||| | |||||||||||||||    
T  20016076 catttgccatttccaatacactgcaacagtactttgtcatcctcaaatgtatataaaaccttgatcaacatatatgatttaccatgatcttgcatgttag 20016175  T
Q  119 aaagagtgaacaatttagtccaagactcttgaattccatattccttcatga-cccaaacatcattaccagaaatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  20016176 aaagagtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaaacatcattaccagaaatt 20016250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 22672109 - 22672189
Alignment:
Q  110 gcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 190  Q
    |||||| ||||| ||||||||||||||||||||| || | | |||||||||||||||| |||||||| || | ||||||||    
T  22672109 gcatgtaagaaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaaa 22672189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 11032960 - 11032910
Alignment:
Q  129 caatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||| |||||||||||| | |||| ||||||||||||| |||||||||    
T  11032960 caatttaatccaagactctttatttccgtattccttcatgagccaaacatc 11032910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 20538086 - 20537975
Alignment:
Q  111 catgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctctt 210  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||| ||| ||||||||||||||  ||||||||    
T  20538086 catgttagaaacagtgaacaatttagtccaagattcttaaattccatattcattcatgacccatatatcatgacccgaaattatgcacaaacaatctctt 20537987  T
Q  211 aacacacccaag 222  Q
    ||||||| ||||    
T  20537986 aacacactcaag 20537975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 36577456 - 36577366
Alignment:
Q  90 ataagatatactagg-atcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||| ||||||| |||| |||||| ||| |  || ||||||||| |||||||||||| | |||||||||||||||| | |||||||||    
T  36577456 ataagatttactagggatctcgcatgtaagacacggtaaacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 6538902 - 6538846
Alignment:
Q  111 catgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcat 167  Q
    ||||||||||| | ||||||||||||||||||| |||| | ||||||| ||||||||    
T  6538902 catgttagaaacactgaacaatttagtccaagaatctttatttccatactccttcat 6538846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 7174371 - 7174412
Alignment:
Q  126 gaacaatttagtccaagactcttgaattccatattccttcat 167  Q
    ||||||| |||||||||| |||||| ||||||||||||||||    
T  7174371 gaacaatctagtccaagaatcttgatttccatattccttcat 7174412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 803180 - 803311
Alignment:
Q  90 ataagatatactaggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaa 189  Q
    ||||||| ||| ||||| |||||||| | | | ||||||||| |||||||||||||||| | |||||||||| ||||| ||||||||||||| |||||||    
T  803180 ataagatttacaaggatattgcatgtgacagacagtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaa 803279  T
Q  190 attatgcacaagaaatctcttaacacacccaa 221  Q
    || ||||||||| |||| || |||| ||||||    
T  803280 atcatgcacaagcaatccctcaacatacccaa 803311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 989473 - 989366
Alignment:
Q  102 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaag 201  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| | |||| || || ||||| ||||||||||||| ||||||||  |||||||||    
T  989473 aggatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaaaaatgcacaag 989374  T
Q  202 aaatctct 209  Q
     |||||||    
T  989373 caatctct 989366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 2459366 - 2459227
Alignment:
Q  88 atataagatatactaggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccag 187  Q
    |||||| || ||||||||||| |||||| |||||  || |||||||| ||||||||||||| | |||||||||||||||| | ||||||| ||| |||||    
T  2459366 atataatatttactaggatctggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccag 2459267  T
Q  188 aaattatgcacaagaaatctcttaacacacccaaggtcaa 227  Q
    |||||||| ||||| |||| || || |||||||| |||||    
T  2459266 aaattatggacaagcaatcactcaatacacccaatgtcaa 2459227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 13479647 - 13479515
Alignment:
Q  110 gcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgaccca---aacatcattaccagaaattatgcacaagaaatc 206  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||   | ||| || ||||| || ||||| |||  ||||    
T  13479647 gcatgttagaaatagtgaacaattttgtccaagactcttgaattccatattctttcatgacccagatatcatgatgaccagcaaatatgctcaaacaatc 13479548  T
Q  207 tcttaacacacccaaggtcaatttggacacatc 239  Q
    ||||||||||| |||| |||| ||| |||||||    
T  13479547 tcttaacacactcaagctcaagttgcacacatc 13479515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 2696707 - 2696831
Alignment:
Q  103 ggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaaga 202  Q
    ||||||| ||||| ||| | ||||||||||||| |||||||||||| | |||||||||||||||| | ||||||||||| | | ||||| | || ||||     
T  2696707 ggatcttccatgtaagatacagtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcatgatcggaaatcaagcccaagc 2696806  T
Q  203 aatctcttaacacacccaaggtcaa 227  Q
    |||| |||||||||||||| |||||    
T  2696807 aatcccttaacacacccaaagtcaa 2696831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 1940568 - 1940672
Alignment:
Q  117 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacaca 216  Q
    ||||| |||||||||||||||||| || |||||| |||||| ||||||||| ||||||||||||| ||||  ||  ||||||||  ||||||| ||||||    
T  1940568 agaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgaccaataacaatgcacaaagaatctctcaacaca 1940667  T
Q  217 cccaa 221  Q
    |||||    
T  1940668 cccaa 1940672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 4157939 - 4158005
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaa 189  Q
    |||||||||||||||||||||||||| | |||||||||||||||| | ||||||||||| |||||||    
T  4157939 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcataaccagaa 4158005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 2644338 - 2644413
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||| ||||| || |||| ||||||||||||||||||||||| ||||||| |||||||| | |||||||||    
T  2644338 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 2659128 - 2659203
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||| ||||| || |||| ||||||||||||||||||||||| ||||||| |||||||| | |||||||||    
T  2659128 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 3754652 - 3754573
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatc 206  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||||  ||||||| | | ||||||| ||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaagtcacgcacaagcaatc 3754573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 4142108 - 4142187
Alignment:
Q  102 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 181  Q
    |||||||  ||||| || || |||||||||||||||||||||||||| | |||||||||||||||| | |||||||||||    
T  4142108 aggatctctcatgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 3746060 - 3745966
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacccaa 221  Q
    |||||||||||||||||||||||  || ||||||||||||| | ||||| ||||| ||||||| | | ||||||| |||| ||||| ||||||||    
T  3746060 aacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaagtcacgcacaagcaatcccttaaaacacccaa 3745966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 956458 - 956333
Alignment:
Q  102 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaag 201  Q
    |||||||||||||| ||||| | |||||||||||  |||||||||||   |||||||||||||||| | |||||||||   |||| |||| |||||||||    
T  956458 aggatcttgcatgtgagaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaag 956359  T
Q  202 aaatctcttaacacacccaaggtcaa 227  Q
     |||| || || |||| |||| ||||    
T  956358 caatccctgaaaacactcaagttcaa 956333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 1931130 - 1931207
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 181  Q
    |||||||||||| ||||| |||||||||||||||||| || |||| | |||||| |||| |||| |||||||||||||    
T  1931130 gatcttgcatgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcat 1931207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 968733 - 968629
Alignment:
Q  117 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacaca 216  Q
    ||||| |||||| ||||||||||| ||||||| | |||||| ||||||||| ||||||||||||| |||   ||| ||||||||  |||| || ||||||    
T  968733 agaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcatgaccgataatcatgcacaaacaatccctcaacaca 968634  T
Q  217 cccaa 221  Q
    |||||    
T  968633 cccaa 968629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 1007522 - 1007454
Alignment:
Q  118 gaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattacca 186  Q
    |||| |||||||||||||||||| ||||| | | |||||||||||||||| ||||||||||||| ||||    
T  1007522 gaaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcacca 1007454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 1022545 - 1022482
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattacca 186  Q
    |||||||||||||||||| ||||| | | |||||||||||||||| ||||||||||||| ||||    
T  1022545 agtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcacca 1022482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 997623 - 997565
Alignment:
Q  132 tttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 190  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||| ||| ||||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaa 997565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 1014013 - 1013955
Alignment:
Q  132 tttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 190  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||| ||| ||||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaa 1013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 2442101 - 2442039
Alignment:
Q  117 agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||||||||||||||||||||| |||| | ||||||| |||||||| | |||||||||    
T  2442101 agaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
Q  128 acaatttagtccaagactcttgaattccatattccttcatgacccaaacat 178  Q
    ||||||||||||||||||||||| |||||||||||||||| | ||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 1936964 - 1937073
Alignment:
Q  112 atgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctctta 211  Q
    |||| ||||| |||||||||||||| ||| || |||| | ||  |||||||||||| ||||||||||||| |||| |||  ||||||||  |||| || |    
T  1936964 atgtgagaaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatccctca 1937063  T
Q  212 acacacccaa 221  Q
    ||||||||||    
T  1937064 acacacccaa 1937073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 7432050 - 7432143
Alignment:
Q  124 gtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacac 217  Q
    ||||||||||||||||| || |||| | ||||||||||||||||   ||||||||||| ||||| ||  ||||||||| |||| ||||| ||||    
T  7432050 gtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgaccagcaaggatgcacaagcaatcccttaatacac 7432143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 2456300 - 2456249
Alignment:
Q  128 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    |||||||||||||||| |||| | |||||||||||||||| |||||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 2476709 - 2476634
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||||||||| || |||| ||||||||||||||||||||| | ||||||| |  ||||| | |||||||||    
T  2476709 gatcttgcatgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 7334215 - 7334290
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    |||||| || ||||| || |||| ||||||||||||||||||||| | |||| || |||||||||| |||||||||    
T  7334215 gatctttcaggttaggaatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 9561961 - 9562036
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||||||||| || | || | ||||||||||||||||||||| ||||||| || ||||| | |||||||||    
T  9561961 gatcttgcatgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 2492157 - 2492083
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacat 178  Q
    ||||||||||||||| || | |  |||||||||||||||||||| || ||||||| |||||||| | ||||||||    
T  2492157 gatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 178
Target Start/End: Original strand, 7442977 - 7443027
Alignment:
Q  128 acaatttagtccaagactcttgaattccatattccttcatgacccaaacat 178  Q
    |||| |||||||||||||||||| ||||||| |||||||||| ||||||||    
T  7442977 acaacttagtccaagactcttgatttccatactccttcatgatccaaacat 7443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 2678394 - 2678495
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacacccaag 222  Q
    |||||||||||||||||| |||||||   |||||||||  ||||| ||||||||||||| |||| || | | ||||||| ||||  | || |||||||||    
T  2678394 agtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaagtcaagcacaagcaatccttcaaaacacccaag 2678493  T
Q  223 gt 224  Q
    ||    
T  2678494 gt 2678495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  130 aatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||||||||||||| | |||||||||||||||| | |||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 746383 - 746423
Alignment:
Q  128 acaatttagtccaagactcttgaattccatattccttcatg 168  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  746383 acaatttagtccaagactcttgatttccatactccttcatg 746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 1891064 - 1891156
Alignment:
Q  128 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacaccca 220  Q
    |||||||||||||||| |||| | |||||| ||||||||| | ||||||||||| |||| |||  | ||||||  |||| || ||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaacaatccctcaacacaccca 1891156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 44001651 - 44001607
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcat 167  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||    
T  44001651 agtgtacagtttagtccaagactctttaattccatattccttcat 44001607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 754609 - 754660
Alignment:
Q  128 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    |||||||||||||||||||||||  |||||| |||||||| | |||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 771499 - 771550
Alignment:
Q  128 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    |||||||||||||||| |||  | |||||||||||||||| |||||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 7324407 - 7324482
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||||||||| || | |  ||||||||||||||||||||| | |||| || |||||||| | |||||||||    
T  7324407 gatcttgcatgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 9565805 - 9565880
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||| ||||||| || | || |||||||||||||||||||||||  ||| || |||||||| | |||||||||    
T  9565805 gatcttgtatgttaggaacaatgtacaatttagtccaagactcttgatctccgtactccttcataatccaaacatc 9565880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 2686307 - 2686411
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttc---atgacccaaacatcattaccagaaattatgcacaagaaatctcttaacacaccc 219  Q
    ||||||||||||| ||||||||||||   ||||||||||||||   || ||||||||||||| |||| | || | ||||||  |||| || || ||||||    
T  2686307 agtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccacagatcaagcacaaacaatccctcaaaacaccc 2686406  T
Q  220 aaggt 224  Q
    |||||    
T  2686407 aaggt 2686411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
Q  130 aatttagtccaagactcttgaattccatattccttcatgacccaaacatca 180  Q
    |||||||||||||| |||  | |||||||||||||||| ||||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 23197064 - 23197014
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaaca 177  Q
    ||||||||||||||||| |||| | |||||||||||||||| | |||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 9594600 - 9594644
Alignment:
Q  104 gatcttgcatgttagaaagagtgaacaatttagtccaagactctt 148  Q
    ||||||||||||||| || |  |||||||||||||||||||||||    
T  9594600 gatcttgcatgttaggaacatggaacaatttagtccaagactctt 9594644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 23766857 - 23766924
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 190  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| | ||||||||||||||||||||    
T  23766857 agtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaa 23766924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 23816705 - 23816772
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 190  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| | ||||||||||||||||||||    
T  23816705 agtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattaccagaaa 23816772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 23861021 - 23861089
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaat 191  Q
    |||||||||||||||||||||| |||  || |||||||||||||| | |||||||||||||| ||||||    
T  23861021 agtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaat 23861089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 11081890 - 11081811
Alignment:
Q  102 aggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 181  Q
    |||||||  ||||| || || ||| |||||||||||||||||||||| | ||||||| |||||||| |||||||||||||    
T  11081890 aggatctctcatgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcat 11081811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  130 aatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||||||||||||| |||||||||||||||||| | |||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 23769641 - 23769702
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattac 184  Q
    |||||||||||||||||||||| ||| | | |||||||||||||| | ||||||||||||||    
T  23769641 agtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattac 23769702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 23819489 - 23819550
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattac 184  Q
    |||||||||||||||||||||| ||| | | |||||||||||||| | ||||||||||||||    
T  23819489 agtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattac 23819550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 23814088 - 23814156
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaat 191  Q
    |||||||||||||||||||||| ||   || |||||||||||||| | |||||||||||||| ||||||    
T  23814088 agtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcattactagaaat 23814156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  130 aatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    ||||||||||||||||||| |||| ||||||||||||| | |||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 20305905 - 20305868
Alignment:
Q  130 aatttagtccaagactcttgaattccatattccttcat 167  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20305905 aatttagtccaagactctttaattccatattccttcat 20305868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 20310309 - 20310272
Alignment:
Q  130 aatttagtccaagactcttgaattccatattccttcat 167  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20310309 aatttagtccaagactctttaattccatattccttcat 20310272  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 23764255 - 23764316
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattac 184  Q
    |||||||||| ||||||||||| |||  || |||||||||||||| | ||||||||||||||    
T  23764255 agtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcattac 23764316  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 41973469 - 41973570
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccag-aaattatgcacaagaaatctcttaacacacccaaggtc 225  Q
    |||| ||||||||| ||| ||| | || ||||||||||||| ||||||||||||| | ||| |||| ||||||||  || | | ||||||||||||||||    
T  41973469 aacagtttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaaatcatgcacaaccaaccccgtaacacacccaaggtc 41973568  T
Q  226 aa 227  Q
    ||    
T  41973569 aa 41973570  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 3181767 - 3181715
Alignment:
Q  129 caatttagtccaagactcttgaattccatattccttcatgacccaaacatcat 181  Q
    ||||||| |||||||||||| | |||||||||||||||| | |||||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcat 3181715  T

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Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 23732223 - 23732155
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaat 191  Q
    |||||||| |||| |||||||| ||| | | |||||||||||||| | |||||||||||||| ||||||    
T  23732223 agtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcattactagaaat 23732155  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 25609350 - 25609420
Alignment:
Q  101 taggatcttgcatgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacc 171  Q
    |||||||| ||| |||||||| |  |||||||||||||||||||||||||||| |||||||||||||||||    
T  25609350 taggatctggcaagttagaaacaacgaacaatttagtccaagactcttgaatttcatattccttcatgacc 25609420  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 51858658 - 51858605
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 180  Q
    ||||||||||||||||| |||  | |||||||||||||||||| ||||||||||    
T  51858658 aacaatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 51381452 - 51381507
Alignment:
Q  125 tgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 180  Q
    |||||||||||||||||||||||| | |||||||||| ||||| | ||||| ||||    
T  51381452 tgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 51756749 - 51756802
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 180  Q
    ||||||||||||||||| | |  | |||||||||||||||||| ||||||||||    
T  51756749 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 51756802  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 51854999 - 51854946
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 180  Q
    ||||||||||||||||| |||  | |||||||||| ||||||| ||||||||||    
T  51854999 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 51854946  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 221
Target Start/End: Complemental strand, 19727948 - 19727839
Alignment:
Q  112 atgttagaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaattatgcacaagaaatctctta 211  Q
    |||| ||||| |||||||| ||||||||| ||||||| | || |||||||  |||| ||||||||||||| ||||||||  ||||||||  ||| ||  |    
T  19727948 atgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaaaccatgcacaaacaatttcgca 19727849  T
Q  212 acacacccaa 221  Q
    ||||||||||    
T  19727848 acacacccaa 19727839  T

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Target: scaffold0044 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 89194 - 89142
Alignment:
Q  128 acaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 180  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||| ||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 1442103 - 1442153
Alignment:
Q  123 agtgaacaatttagtccaagactcttgaattccatattccttcatgaccca 173  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| |||||    
T  1442103 agtgaacaatttagtccaagaatctttaattccataatccttcataaccca 1442153  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaaca 177  Q
    |||||||||||||||||||||| | |||||||||||||||| | |||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaaca 177  Q
    |||||||||||||||||||||| | |||||||||||||||| | |||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 4183000 - 4183053
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 180  Q
    ||||||||||||||||| | |  | |||||||||||||||||| ||||||||||    
T  4183000 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4183053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 4743844 - 4743897
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatca 180  Q
    ||||||||||||||||| | |  | |||||||||||||||||| ||||||||||    
T  4743844 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4743897  T

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Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 777 - 878
Alignment:
Q  127 aacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccag-aaattatgcacaagaaatctcttaacacacccaaggtc 225  Q
    |||| ||||||||| ||| ||| | || ||||||||||||| ||||||||||||| | ||| |||| ||||||||  || | | ||||||||||||||||    
T  777 aacagtttagtccatgacactttattttcatattccttcataacccaaacatcatgatcagaaaatcatgcacaaccaaccccgtaacacacccaaggtc 876  T
Q  226 aa 227  Q
    ||    
T  877 aa 878  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 1078157 - 1078211
Alignment:
Q  125 tgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatc 179  Q
    |||||||||||||||| ||||||  | ||||||| |||||||| |||||||||||    
T  1078157 tgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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