View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11984_high_1 (Length: 511)
Name: NF11984_high_1
Description: NF11984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11984_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 141 - 426
Target Start/End: Original strand, 33756985 - 33757270
Alignment:
| Q |
141 |
gtgaaagttagttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacagccacca |
240 |
Q |
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| T |
33756985 |
gtgaaagtttgttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacaaccacca |
33757084 |
T |
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| Q |
241 |
ctcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactttta |
340 |
Q |
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| T |
33757085 |
ctcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttatttccaatacaccaattcgaaccactttta |
33757184 |
T |
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| Q |
341 |
atgctttcactctcttcatgattaataaacattcttctcaatcacaatcaccgtcaccgtcacagtcatttccgttaccgtcacag |
426 |
Q |
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| T |
33757185 |
atgctttcactctcttcatgattaataaacattcttctcaatcacaatcaccgtcacagtcacagtcatttccattaccgtcacag |
33757270 |
T |
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Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 3855697 - 3855632
Alignment:
| Q |
446 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
511 |
Q |
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| T |
3855697 |
caagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatc |
3855632 |
T |
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