View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11984_high_10 (Length: 359)
Name: NF11984_high_10
Description: NF11984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11984_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 203 - 341
Target Start/End: Original strand, 39040814 - 39040952
Alignment:
| Q |
203 |
ccaaacacaccaatatgtgtgaagggattgtaacaattttgcattctatttcagatttaactacaaagacacttggttaaaaagtcaagaaagacagagt |
302 |
Q |
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| T |
39040814 |
ccaaacacaccaatatgtgtgaagggattgtaacaattttgcattctatttcagatttaactacaaagacatttggttaaaaagtcaagaaagacagagt |
39040913 |
T |
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| Q |
303 |
cgtacaagggacagtccaataactggttgaactaacaca |
341 |
Q |
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| T |
39040914 |
cgtacaagggacagtccaataactggttgaactaacaca |
39040952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 31694346 - 31694196
Alignment:
| Q |
30 |
tgatagtgaggaactt--aggtggtggtggaatggggcatgaaggacaggatgatgaaagatagtgtaaaaatattactatgtttgacagagtataataa |
127 |
Q |
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| T |
31694346 |
tgatagtgaggaacttggaggtggtggtggagtggggcatggaggacagaatgatgaaagatagtgtaaaaataatcctatgtttgacggagtataataa |
31694247 |
T |
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| Q |
128 |
gagtgtgtacttcatttgatctagtcgttaaatataactttcctatggtgg |
178 |
Q |
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| T |
31694246 |
gagtgtgtacttcatttgatctaatcgttaaatttaactttcctatggtgg |
31694196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 45534212 - 45534062
Alignment:
| Q |
30 |
tgatagtgaggaacttag--gtggtggtggaatggggcatgaaggacaggatgatgaaagatagtgtaaaaatattactatgtttgacagagtataataa |
127 |
Q |
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| T |
45534212 |
tgatagtgaggaacttggaagtggtgttggaatggggcatgaaggacaggatgatgaaagatagtgtaaaaataatactatgtttgtcggagtataataa |
45534113 |
T |
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| Q |
128 |
gagtgtgtacttcatttgatctagtcgttaaatataactttcctatggtgg |
178 |
Q |
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| T |
45534112 |
gagtgtgtactttatttgatctagtcgttaaatataactttcttatggtgg |
45534062 |
T |
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