View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11984_high_11 (Length: 342)
Name: NF11984_high_11
Description: NF11984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11984_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 40893979 - 40894279
Alignment:
| Q |
1 |
tttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttggactattttaggagttgtttgtctgtttcnnnnnnnnctctctc |
100 |
Q |
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| T |
40893979 |
tttttaaattgaatttcatattggaggatttctggttgtttgtttcagggagcttgaactatttcaggagttgtttgtctgtttcttttttttttctctc |
40894078 |
T |
|
| Q |
101 |
gccatttcagcttcaaatttgcgtttgatttttcatttagggagtgagtgagatcatttgtagtggatgtatgtgtagctccttgtggtgtgtctcagaa |
200 |
Q |
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| T |
40894079 |
gccatttcagcttcaaatttgcgtttgatttttcatttaggaagtgagtgagatcatttgtagtggatgtatgtgtagcttcttgtggtgtgtctcagaa |
40894178 |
T |
|
| Q |
201 |
ttatgtggtttctgtacatatggagctacaaaaaccatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattaggacccaaaagt |
300 |
Q |
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| T |
40894179 |
ttatgtggtttgtgtacatatggagctacaaaaatcatgaatgttgtaatgtttgtggtgtgttaaagttggaattgttttacaattaggacccaaaagt |
40894278 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
40894279 |
t |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 31621364 - 31621396
Alignment:
| Q |
103 |
catttcagcttcaaatttgcgtttgatttttca |
135 |
Q |
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| T |
31621364 |
catttcagcttcaaatttgcgtttgctttttca |
31621396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 36574766 - 36574734
Alignment:
| Q |
103 |
catttcagcttcaaatttgcgtttgatttttca |
135 |
Q |
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| T |
36574766 |
catttcagcttcaaatttgcgtttgctttttca |
36574734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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