View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11984_high_2 (Length: 506)
Name: NF11984_high_2
Description: NF11984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11984_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 56 - 486
Target Start/End: Complemental strand, 9781350 - 9780924
Alignment:
| Q |
56 |
agcaccctactcaatactcatggtccctagctccttctctgaatataccaattcatatcttatcttattttcgtcttctcnnnnnnnagttagtaatttg |
155 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| || | ||||||| ||| |
|
|
| T |
9781350 |
agcaccctactcaatactcatggtccct----ccttctctgaatataccaattcatatcttatcttattt-cgtcttttctttttttatttagtaacttg |
9781256 |
T |
|
| Q |
156 |
agaatgttgaaaatcacatttttattatcttatcttctatatataaaccaacaaactcactttaa-gctgagcaaataaattaagaaagaaaaatatttc |
254 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||| | |
|
|
| T |
9781255 |
agaatgttgaaaatcacaattttcttatcttatcttctatattgaaaccaacaaactcactttaaagctcagcaaacaaattaacaaagaaaaatattcc |
9781156 |
T |
|
| Q |
255 |
aaacaaagacatattttaatttctactttgatttttcctttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattgtt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9781155 |
aaacaaagacatattttaatttctactttgatttttcctttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattgtt |
9781056 |
T |
|
| Q |
355 |
gttgcacatattgcagaagctgatagatttggctacattatttatactcttactccatgctatccttttcttctaggttcaatttcggttgctacgccac |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
9781055 |
gttgcacatattgcagaagctgatagatttgccttcattatttatactcttactccatgctatccttttcttataggttcaatttcagttgctacgccac |
9780956 |
T |
|
| Q |
455 |
attgttgtgaagcagtgaaggaagttgatgat |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9780955 |
attgttgtgaagcagtgaaggaagttgatgat |
9780924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 29358218 - 29358248
Alignment:
| Q |
30 |
tgaggatcgtatggactatagattatagcac |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
29358218 |
tgaggatcgtatggactatagattatagcac |
29358248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University