View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11984_high_3 (Length: 451)

Name: NF11984_high_3
Description: NF11984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11984_high_3
NF11984_high_3
[»] chr1 (14 HSPs)
chr1 (14-374)||(8936168-8936530)
chr1 (14-374)||(8959707-8960051)
chr1 (14-378)||(8924545-8924893)
chr1 (387-451)||(47185712-47185776)
chr1 (387-451)||(47198251-47198315)
chr1 (231-292)||(8945879-8945940)
chr1 (232-378)||(9475290-9475438)
chr1 (316-371)||(9306840-9306895)
chr1 (214-378)||(9335503-9335669)
chr1 (230-375)||(9245056-9245203)
chr1 (329-378)||(8945979-8946028)
chr1 (220-277)||(9359247-9359304)
chr1 (334-375)||(9359363-9359404)
chr1 (395-451)||(47212340-47212396)
[»] chr6 (2 HSPs)
chr6 (220-292)||(15912869-15912941)
chr6 (323-377)||(15912782-15912836)
[»] chr3 (1 HSPs)
chr3 (328-375)||(9168511-9168558)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 374
Target Start/End: Original strand, 8936168 - 8936530
Alignment:
Q  14 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8936168 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgttgtaggatatttaagaatttccaaagtaagagcttctgca 8936267  T
Q  114 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 213  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  8936268 ttttcatatatagtagtatcaactattcttctctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtataagt 8936367  T
Q  214 aatagtgaggagtggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttga-tgatgtc-catctcattggcc 311  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || |||   |||  ||    
T  8936368 aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 8936467  T
Q  312 cgacaacaaagttaaagttgttatgttgttttagcaggataactcatacctcggatcaccaca 374  Q
    |||||||| ||||||  |||| |||||||||| |||||||||||||||||| |||||||||||    
T  8936468 cgacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccaca 8936530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 374
Target Start/End: Original strand, 8959707 - 8960051
Alignment:
Q  14 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||  || |    
T  8959707 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaa 8959788  T
Q  114 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 213  Q
    | || |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  8959789 tatttatatctagtagtatcaactattctactctggtaagtttgatatggatcaacagaatcgtagatataagagctgctgaaattataattgtacaagt 8959888  T
Q  214 aatagtgaggagtggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttga-tgatgtc-catctcattggcc 311  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || |||   |||  ||    
T  8959889 aatagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttacc 8959988  T
Q  312 cgacaacaaagttaaagttgttatgttgttttagcaggataactcatacctcggatcaccaca 374  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||    
T  8959989 cgacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccaca 8960051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 378
Target Start/End: Original strand, 8924545 - 8924893
Alignment:
Q  14 atcatcactcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatgtaggatatttaagaatttccaaagtaagagcttctgca 113  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||  || |    
T  8924545 atcatccctcacaggactgctacaattcatgtaaattacgtgctggaacatttgtaatgatg------------------ccaaagtaagagctggtgaa 8924626  T
Q  114 ttttcatatatagtagtatcaactattctattctggtaagtttgatatggatcaacagaattgaagatataagagctgctgaaattataattgtacaagt 213  Q
    | || |||| |||||||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  8924627 tatttatatctagtagtatcaactattctgctctggtatgtttgatatggatcaacagaatcgaagatataagagctgctgaaattataattgtataagt 8924726  T
Q  214 aatagtgaggagtggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttga-tgatgtc-catctcattggcc 311  Q
    ||||| |||||  || ||||||||||||||||| |||||||||||||||||  |  |||||||||||||||||||||| |||| || |||   |||  |     
T  8924727 aatagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttact 8924826  T
Q  312 cgacaacaaagttaaagttgttatgttgttttagcaggataactcatacctcggatcaccacaggtt 378  Q
    |||||| | ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  8924827 cgacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggtt 8924893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 387 - 451
Target Start/End: Complemental strand, 47185776 - 47185712
Alignment:
Q  387 tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatag 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47185776 tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatag 47185712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 387 - 451
Target Start/End: Complemental strand, 47198315 - 47198251
Alignment:
Q  387 tcactgatgagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatag 451  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  47198315 tcactgatgagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatag 47198251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 8945879 - 8945940
Alignment:
Q  231 gagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgat 292  Q
    ||||||||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||||    
T  8945879 gagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgat 8945940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 378
Target Start/End: Complemental strand, 9475438 - 9475290
Alignment:
Q  232 agcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgat-gatgtc-catctcattggcccgacaacaaagttaaagt 329  Q
    |||||||| ||||||||||||| ||||||||||  |  ||||||||||||| ||||||||| ||  || |||   | |  ||||| | ||||||||| ||    
T  9475438 agcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaagcaaagttaacgt 9475339  T
Q  330 tgttatgttgttttagcaggataactcatacctcggatcaccacaggtt 378  Q
    ||| |||||||||  |||||||||||| |||||||||||||||||||||    
T  9475338 tgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggtt 9475290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 9306895 - 9306840
Alignment:
Q  316 aacaaagttaaagttgttatgttgttttagcaggataactcatacctcggatcacc 371  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  9306895 aacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcacc 9306840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 378
Target Start/End: Original strand, 9335503 - 9335669
Alignment:
Q  214 aatagtgaggagtggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttga--tgatgtccatctcattggcc 311  Q
    ||||| ||||| ||| |||| ||||||| |||| |||||| ||||||||||||||||||||||||||  |||||||||  |  ||  |||   |||  ||    
T  9335503 aatagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacc 9335602  T
Q  312 cgacaacaaagttaaagttgttatgttgttttagcaggataactcatacctcggatcaccacaggtt 378  Q
     || |||| |||||| | ||| |||||||||| |||||||||||| ||| | |||||||||||||||    
T  9335603 tgaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggtt 9335669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 375
Target Start/End: Complemental strand, 9245203 - 9245056
Alignment:
Q  230 ggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttga-tgatgtc-catctcattggcccgacaacaaagttaaa 327  Q
    |||||||  |||||||| |||||||||||||||||||  |||||||||||| |||||||||| ||   || |||   | |  ||||| |||| ||||||     
T  9245203 ggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttacccgaaaacagagttaac 9245104  T
Q  328 gttgttatgttgttttagcaggataactcatacctcggatcaccacag 375  Q
      ||| |||||||||| |||||||||||||||| ||||||||||||||    
T  9245103 actgtgatgttgttttcgcaggataactcatacttcggatcaccacag 9245056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 8945979 - 8946028
Alignment:
Q  329 ttgttatgttgttttagcaggataactcatacctcggatcaccacaggtt 378  Q
    |||| ||||| |||| |||||||||||| |||||||||||||| ||||||    
T  8945979 ttgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggtt 8946028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 9359247 - 9359304
Alignment:
Q  220 gaggagtggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgta 277  Q
    ||||| ||| |||||||| |||||||| |||| | |||||||||| ||||||||||||    
T  9359247 gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgta 9359304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 9359363 - 9359404
Alignment:
Q  334 atgttgttttagcaggataactcatacctcggatcaccacag 375  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  9359363 atgttgttttcgcaggataactcgtacttcggatcaccacag 9359404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 47212396 - 47212340
Alignment:
Q  395 gagtaaagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatag 451  Q
    |||||||||| ||||||||| | |||||| || ||||||||||  ||||||||||||    
T  47212396 gagtaaagtgcagcatcattcttaaatcctaaggtgttgaacagaactggagcatag 47212340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 15912941 - 15912869
Alignment:
Q  220 gaggagtggtggagcaatcaccctcttgaattccgggatcaactaaccgaattgtgtagttattgtagttgat 292  Q
    ||||| ||| |||||||||||||||||| |  |||| ||||||||||| |||||||||||| || ||||||||    
T  15912941 gaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgat 15912869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 377
Target Start/End: Complemental strand, 15912836 - 15912782
Alignment:
Q  323 ttaaagttgttatgttgttttagcaggataactcatacctcggatcaccacaggt 377  Q
    |||| ||||| |||||||||| |||||||||||| || |||||||| ||||||||    
T  15912836 ttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggt 15912782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 375
Target Start/End: Original strand, 9168511 - 9168558
Alignment:
Q  328 gttgttatgttgttttagcaggataactcatacctcggatcaccacag 375  Q
    ||||| ||||||||||  ||||||||||| ||||||||||||||||||    
T  9168511 gttgtgatgttgttttcacaggataactcgtacctcggatcaccacag 9168558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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