View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11984_high_8 (Length: 362)
Name: NF11984_high_8
Description: NF11984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11984_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 53679794 - 53679678
Alignment:
| Q |
85 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatcttcacatatttctacttttcatgaaatc |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
53679794 |
gaacctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaataccattcatttaacaatcttcacttatttctacttttcatgaaatc |
53679695 |
T |
|
| Q |
185 |
atcattctcaatctccc |
201 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
53679694 |
gtcattctcaatctccc |
53679678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 274 - 362
Target Start/End: Complemental strand, 53679605 - 53679517
Alignment:
| Q |
274 |
acctgcttaatcaacattgaatcacctttcttactttcgtttgattttcctgaaaatccatccatttagatcagaaatagaacctaatt |
362 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53679605 |
acctgcttaatcaacaccgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaatt |
53679517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 3855632 - 3855697
Alignment:
| Q |
4 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattgatatataaagattataggcgtcttg |
3855697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 32375198 - 32375255
Alignment:
| Q |
94 |
tgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaa |
151 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||||| | ||||||||||| |
|
|
| T |
32375198 |
tgtatggatcttcttccttttcttctcttctctgtaaatccaaatatcattcattcaa |
32375255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 19266145 - 19266212
Alignment:
| Q |
89 |
ctgtgtgtatagatcttcttccctttcttctcttccatgtaaatccaaaaaccattcattcaacaatc |
156 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
19266145 |
ctgtgtgtacggatcttcttccttttcttctcttctctgtaaatccaaattccattcattcaacaatc |
19266212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University