View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11985_high_1 (Length: 879)

Name: NF11985_high_1
Description: NF11985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11985_high_1
NF11985_high_1
[»] chr5 (5 HSPs)
chr5 (431-590)||(41361370-41361529)
chr5 (362-546)||(34153968-34154151)
chr5 (410-590)||(41038062-41038243)
chr5 (163-195)||(34154339-34154371)
chr5 (240-274)||(34154297-34154331)
[»] chr4 (6 HSPs)
chr4 (408-514)||(6800276-6800384)
chr4 (22-108)||(4737196-4737282)
chr4 (491-579)||(6800186-6800273)
chr4 (397-479)||(6804677-6804761)
chr4 (463-590)||(1393007-1393132)
chr4 (530-579)||(6804628-6804676)
[»] chr2 (2 HSPs)
chr2 (397-589)||(13310453-13310646)
chr2 (397-501)||(10038612-10038712)
[»] chr3 (2 HSPs)
chr3 (462-513)||(53833602-53833653)
chr3 (409-440)||(53833564-53833595)
[»] chr8 (2 HSPs)
chr8 (196-254)||(2806529-2806587)
chr8 (163-195)||(2806607-2806639)
[»] chr1 (3 HSPs)
chr1 (362-441)||(21431081-21431156)
chr1 (472-540)||(2114887-2114955)
chr1 (472-529)||(21431011-21431068)
[»] scaffold0635 (1 HSPs)
scaffold0635 (397-501)||(8358-8458)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 4e-65; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 431 - 590
Target Start/End: Original strand, 41361370 - 41361529
Alignment:
Q  431 agtgttagtgagaagagctgttgtatcctggag--cactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccag 528  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41361370 agtgttagtgagaagagctgttgtatcctggagagcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaatgctcttaagcccag 41361469  T
Q  529 tgcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttttattttactga 590  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  41361470 tgcgtttgcacgcctca-gccaaggaccgataagttcttcctttcttc-tttattttactga 41361529  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 362 - 546
Target Start/End: Complemental strand, 34154151 - 34153968
Alignment:
Q  362 caaataacaattaagttcccatgagcgcatccaatatagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctg 460  Q
    ||||||||||||||||||||||||||  ||||||||  || |||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||    
T  34154151 caaataacaattaagttcccatgagc--atccaata--gtggttcctgtgcccttgctggttcacgtgcagtgttagtgaaaagtggctgttgtatcctg 34154056  T
Q  461 gag--cactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcag 546  Q
    |||  ||||||  |||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||  |||||||||||||    
T  34154055 gagagcactagctttgaggccaactgcatcaggtcattgacctgtggtggcgaaatgctcttaagcccagtgcaattgcacgcctcag 34153968  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 410 - 590
Target Start/End: Complemental strand, 41038243 - 41038062
Alignment:
Q  410 tgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtgattgacctgtggc 506  Q
    ||||||||||| || |||||||||||||| |||||| | |||||||||||||  |||||||||  ||||||||||||| |||| || |||||| |||||     
T  41038243 tgcccttgctagttaacgtgcagtgttagcgagaagtggctgttgtatcctgaagagcactagctttgaggccaactgtatcaggtcattgacatgtggt 41038144  T
Q  507 ggcgaaatgctcttaagcccagtgcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttttattttactga 590  Q
    |||||||||||||||||| |  |||  |||||||||||| ||| | |||||||||  |||| | |||||| |||||||||||||    
T  41038143 ggcgaaatgctcttaagctcgatgcaattgcacgcctca-gccaacgaccgataaactctttccttcttc-tttattttactga 41038062  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 34154371 - 34154339
Alignment:
Q  163 ctaaaccgttttcttttgaccaagttatttagc 195  Q
    |||||||||||||||||||||||||||||||||    
T  34154371 ctaaaccgttttcttttgaccaagttatttagc 34154339  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 274
Target Start/End: Complemental strand, 34154331 - 34154297
Alignment:
Q  240 taatagggtatacagttttgcaacgttattatatt 274  Q
    |||||||| ||||||||||||||||||||||||||    
T  34154331 taatagggcatacagttttgcaacgttattatatt 34154297  T

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Target: chr4 (Bit Score: 90; Significance: 5e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 408 - 514
Target Start/End: Complemental strand, 6800384 - 6800276
Alignment:
Q  408 tgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtgattgacctgtgg 505  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  6800384 tgtgcccttgctatttcacgtgcagtgttagtgaggagagctgttgtatcctggagagcactagtcttgaggccaactgcatcaggtgattgacctgtgg 6800285  T
Q  506 cggcgaaat 514  Q
    |||||||||    
T  6800284 cggcgaaat 6800276  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 4737196 - 4737282
Alignment:
Q  22 taattaaatttcatcttgaattctatgttgggacttttgactgtccacatgctttcaaaacaactgggcaataaaggggactaattg 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  4737196 taattaaatttcatcttgaattctatgttgggacttttcactgtccacatgctttcaaaacaaatgggcaataaaggggactaattg 4737282  T

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Target: chr4; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 491 - 579
Target Start/End: Complemental strand, 6800273 - 6800186
Alignment:
Q  491 gtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttt 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  6800273 gtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctca-gccaaggaccgataagttcttcctttcttcttt 6800186  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 397 - 479
Target Start/End: Complemental strand, 6804761 - 6804677
Alignment:
Q  397 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggcc 479  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| ||||||||||    
T  6804761 atagttgttcccgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtattctggagagcactaatcttgaggcc 6804677  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 463 - 590
Target Start/End: Complemental strand, 1393132 - 1393007
Alignment:
Q  463 gcactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcaggccgaggaccgataag 562  Q
    |||||||  |||||||||||||||| | ||||||||| ||||| |||||||||||||||| || |||   ||||||||| ||| | | | || |||||||    
T  1393132 gcactagctttgaggccaactgcattaggtgattgacatgtggtggcgaaatgctcttaaacctagtatatttgcacgcttca-gtcaacgagcgataag 1393034  T
Q  563 ttcttcctttcttcttttattttactga 590  Q
    |||||| ||||||| |||||||||||||    
T  1393033 ttcttcatttcttc-tttattttactga 1393007  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 530 - 579
Target Start/End: Complemental strand, 6804676 - 6804628
Alignment:
Q  530 gcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttt 579  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  6804676 gcgtttgcacgcctcag-ccaaggaccgataagttcttcctttcttcttt 6804628  T

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Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 397 - 589
Target Start/End: Complemental strand, 13310646 - 13310453
Alignment:
Q  397 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagag-ctgttgtatcctggag--cactagtcttgaggccaactgcatcacgtg 493  Q
    ||||| |||| ||||||||| ||| |||||||| ||||||||||||| | | ||||| |||||| |||  | ||||  |||||||||||||||||| |||    
T  13310646 atagtggttcatgtgcccttactaattcacgtgtagtgttagtgagaggtggctgttttatcctagagagcgctagctttgaggccaactgcatcaggtg 13310547  T
Q  494 attgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacgcctcaggccgaggaccgataagttcttcctttcttcttttattttactg 589  Q
    |||||||||||| || |||||||||||||||||| | | |||||| ||||||  || | ||||||||| |||||| | ||||| ||||||||||||    
T  13310546 attgacctgtggtggtgaaatgctcttaagcccaatacatttgcatgcctca-tccaacgaccgataaattcttcatctcttc-tttattttactg 13310453  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 397 - 501
Target Start/End: Original strand, 10038612 - 10038712
Alignment:
Q  397 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtga 494  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||      | ||||||||| ||  ||| |||||  |||||||||||| ||||| ||||    
T  10038612 atagttgttcatgtgcccttactagttcacgtgcagtgttagtg------gttgttgtatcgtggagagtactagctttgaggccaactacatcaagtga 10038705  T
Q  495 ttgacct 501  Q
    |||||||    
T  10038706 ttgacct 10038712  T

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Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 53833602 - 53833653
Alignment:
Q  462 agcactagtcttgaggccaactgcatcacgtgattgacctgtggcggcgaaa 513  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53833602 agcactagtcttgaggccaactgcatcaggtgattgacctgtggcggcgaaa 53833653  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 440
Target Start/End: Original strand, 53833564 - 53833595
Alignment:
Q  409 gtgcccttgctatttcacgtgcagtgttagtg 440  Q
    ||||||||||||||||||||||||||||||||    
T  53833564 gtgcccttgctatttcacgtgcagtgttagtg 53833595  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 2806587 - 2806529
Alignment:
Q  196 atcgtggcctatttacttggtagaatttgttggtcacacctaattaatagggtatacag 254  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||    
T  2806587 atcgtggcctatttacttggtagagtttgttggtcacacctaattaatatgctatacag 2806529  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 2806639 - 2806607
Alignment:
Q  163 ctaaaccgttttcttttgaccaagttatttagc 195  Q
    |||||||||||||||||||||||||||||||||    
T  2806639 ctaaaccgttttcttttgaccaagttatttagc 2806607  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 362 - 441
Target Start/End: Complemental strand, 21431156 - 21431081
Alignment:
Q  362 caaataacaattaagttcccatgagcgcatccaatatagttgttcctgtgcccttgctatttcacgtgcagtgttagtga 441  Q
    ||||||||||||||||||||||||||  |||||| |  || |||||||||||||||||| ||||| | ||||||||||||    
T  21431156 caaataacaattaagttcccatgagc--atccaaga--gtggttcctgtgcccttgctagttcacatacagtgttagtga 21431081  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 472 - 540
Target Start/End: Complemental strand, 2114955 - 2114887
Alignment:
Q  472 ttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagtgcgtttgcacg 540  Q
    |||||| ||||||||||| | ||||||| | || |||||||||||||||||||||| || |||||||||    
T  2114955 ttgaggtcaactgcatcaggcgattgacatatgtcggcgaaatgctcttaagcccaatgtgtttgcacg 2114887  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 529
Target Start/End: Complemental strand, 21431068 - 21431011
Alignment:
Q  472 ttgaggccaactgcatcacgtgattgacctgtggcggcgaaatgctcttaagcccagt 529  Q
    |||||||||||||||||| || |||||||||||  | ||||||||||||||| |||||    
T  21431068 ttgaggccaactgcatcaggtcattgacctgtgatgacgaaatgctcttaagtccagt 21431011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 397 - 501
Target Start/End: Complemental strand, 8458 - 8358
Alignment:
Q  397 atagttgttcctgtgcccttgctatttcacgtgcagtgttagtgagaagagctgttgtatcctg--gagcactagtcttgaggccaactgcatcacgtga 494  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||      | ||||||||| ||  ||| |||||  |||||||||||| ||||| ||||    
T  8458 atagttgttcatgtgcccttactagttcacgtgcagtgttagtg------gttgttgtatcgtggagagtactagctttgaggccaactacatcaagtga 8365  T
Q  495 ttgacct 501  Q
    |||||||    
T  8364 ttgacct 8358  T

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